| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,833,304 – 11,833,411 |
| Length | 107 |
| Max. P | 0.855805 |
| Location | 11,833,304 – 11,833,411 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 79.13 |
| Mean single sequence MFE | -34.27 |
| Consensus MFE | -25.13 |
| Energy contribution | -25.18 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.855805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11833304 107 + 22407834 UGCAGAUUCCGCUGCAUGUCCUCGUAGGCAACGGUCUCAUGAUCCAUGCGGCGGAGGAGACUGCGUAUCCUGUG----GAAAUA--AAGAAAAC--AUUAGUUUUAUUUGUGUAA .((((.((((((((((((...((((((((....)))).))))..))))))))))))....))))...(((...)----)).(((--((.(((((--....))))).))))).... ( -36.70) >DroSec_CAF1 56450 98 + 1 UGCAGAUUCCGCUGCAUGUCCUCGUAGGCGACGGUCUCAUGAUCCAUGCGGCGCAGGAGACUGCGUAUCCUGUG----GAAUUC--AAGAAAAU--AUUAGUUUAC--------- ....((((((((((((((...((((((((....)))).))))..))))))))((((....)))).........)----))))).--........--..........--------- ( -34.80) >DroEre_CAF1 22203 106 + 1 UGGAGAUUUCGCUGCAUGUCCUCGUAGGCAACUGCCUCAUGAUCCAUGCGGCGGAGGAGACUGCGUAUUCUGUG----GAAUUG--AAGAAAUC--AUAAGUGCUGUAA-UGUGA ....((((((((((((((...((((((((....)))).))))..))))))))(.((....)).)..........----......--..))))))--.............-..... ( -34.10) >DroYak_CAF1 23317 106 + 1 UGCAGAUUCCGCUGCAUGUCCUCGUAGGCCACGGCCUCAUGAUCCAUGCGGCGGAGAAGACUGCGUAUUCUGUG----GAAUGA--AAGAGAUC--AUAAGUUUGGUAC-UGUGA .((((.((((((((((((...((((((((....)))).))))..))))))))))))....)))).(((((....----))))).--......((--(((.((.....))-))))) ( -39.90) >DroAna_CAF1 32185 107 + 1 UGCAGAUUGCGCUGCAUGUCCUCGUAGGCCACGGUCUCGUGAUCCAUGCGGCGGAGAAGACUGCGUAUUCUGUG----GGUUAACAAACAUUUU--AUUAGUUUUU--AGGGUUC .(((((.(((((((((((..(.((.((((....)))))).)...))))))))(.((....)).)))).))))).----................--..........--....... ( -29.80) >DroPer_CAF1 25848 104 + 1 UGCAGAUUGCGCUGCAUGUCCUCGUAGGCAACGGUCUCGUGAUCCAUGCGGCGGAGAAGACUACGUAUUCUGUGUUGGGGAUGA---AAAGAUCGAGUUAGUGUUGA-------- (((((......)))))((((......)))).((((((..(.((((...(((((.((((.((...)).)))).))))).)))).)---..))))))............-------- ( -30.30) >consensus UGCAGAUUCCGCUGCAUGUCCUCGUAGGCAACGGUCUCAUGAUCCAUGCGGCGGAGAAGACUGCGUAUUCUGUG____GAAUUA__AAGAAAUC__AUUAGUUUUGU___UGU_A .(((((...(((((((((...((((((((....)))).))))..))))))))).((....))......))))).......................................... (-25.13 = -25.18 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:11 2006