| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,831,823 – 11,831,948 |
| Length | 125 |
| Max. P | 0.723406 |
| Location | 11,831,823 – 11,831,917 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 73.68 |
| Mean single sequence MFE | -15.86 |
| Consensus MFE | -10.06 |
| Energy contribution | -10.29 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.723406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11831823 94 - 22407834 CCAGCUAGCAAUUUUUUUUAUUAUUGAAUAUCUUUUAUCGAGCCUAUUGAUUGCAAAACAUAUUGUUAGCUUGAAUACUGAGCCUAAUUGCUGU .((((..((((((.......((..((((.....))))..)).......))))))..........((((((((.......))).))))).)))). ( -14.94) >DroSec_CAF1 54998 78 - 1 UAAGAUAGCAAUUUUUUU----GUUGAUACUAUUUUAU------------UCGCAAAGCAUAUUGCUAGCUUGAAUACUGAGCCGAAUUACUGU ((((.(((((((..((((----((.((((......)))------------).))))))...))))))).))))..................... ( -14.90) >DroSim_CAF1 20590 75 - 1 UAAGCUAGCAAUUUUUUU-------UAUGCUAUUUUAU------------UCGCAAAGCAUAUUGCUAGCUUGAAUAUUGAGCCGAAUUACAGU (((((((((((.......-------((((((.......------------......)))))))))))))))))..................... ( -17.73) >consensus UAAGCUAGCAAUUUUUUU_____UUGAUACUAUUUUAU____________UCGCAAAGCAUAUUGCUAGCUUGAAUACUGAGCCGAAUUACUGU ((((((((((((.................................................))))))))))))..................... (-10.06 = -10.29 + 0.23)
| Location | 11,831,843 – 11,831,948 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 76.59 |
| Mean single sequence MFE | -17.41 |
| Consensus MFE | -10.86 |
| Energy contribution | -11.09 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11831843 105 - 22407834 AUUUUUAAGGGUUUUUACAGAACUCAACAUUCCAGCUAGCAAUUUUUUUUAUUAUUGAAUAUCUUUUAUCGAGCCUAUUGAUUGCAAAACAUAUUGUUAGCUUGA ........((((((.....)))))).....((.((((((((((...((((...((..(....(((.....)))....)..))...))))...)))))))))).)) ( -18.20) >DroSec_CAF1 55018 89 - 1 AUUUUUUAGGAUUUUUACAGGACUCAGCAUUUAAGAUAGCAAUUUUUUU----GUUGAUACUAUUUUAU------------UCGCAAAGCAUAUUGCUAGCUUGA ..............................(((((.(((((((..((((----((.((((......)))------------).))))))...))))))).))))) ( -15.60) >DroSim_CAF1 20610 86 - 1 AUUUUUUAGGAUUUUUACAGGACUCAGCAUUUAAGCUAGCAAUUUUUUU-------UAUGCUAUUUUAU------------UCGCAAAGCAUAUUGCUAGCUUGA ..............................((((((((((((.......-------((((((.......------------......)))))))))))))))))) ( -18.43) >consensus AUUUUUUAGGAUUUUUACAGGACUCAGCAUUUAAGCUAGCAAUUUUUUU_____UUGAUACUAUUUUAU____________UCGCAAAGCAUAUUGCUAGCUUGA ..............................(((((((((((((.................................................))))))))))))) (-10.86 = -11.09 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:09 2006