Locus 4118

Sequence ID 2L_DroMel_CAF1
Location 11,826,724 – 11,826,825
Length 101
Max. P 0.932352
window6502

overview

Window 2

Location 11,826,724 – 11,826,825
Length 101
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 70.72
Mean single sequence MFE -26.43
Consensus MFE -10.41
Energy contribution -10.50
Covariance contribution 0.09
Combinations/Pair 1.19
Mean z-score -2.16
Structure conservation index 0.39
SVM decision value 1.22
SVM RNA-class probability 0.932352
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11826724 101 - 22407834
AUGCCCUAG---CUGGAUUUUUAUCGAACGCUUCUCUCUCGUUUUGAUGAAAGUGCAGGCCAUUUCCAUCAUGGGUUU--U--UUUCUUUUUUGGGG-------GGUUGUAUCUA
..(((((..---(((.((((((((((((((.........)).)))))))))))).))).......(((....(((...--.--..)))....)))))-------)))........ ( -25.60)
>DroSec_CAF1 50187 103 - 1
AUGCCCUAG---CUGGAUUUUCAUCGAACGCUCCUCCCUCGUUUAGAUGAAAGUGCAGGCCAUUUCCAUCAUGGCUUU--UCCUUUUUUUUUUUUGG-------GUUUGUAUCUA
..((((...---(((.((((((((((((((.........))))).))))))))).)))(((((.......)))))...--...............))-------))......... ( -27.80)
>DroSim_CAF1 15751 103 - 1
AUGACCUAG---CUGGAUUUUCAUCGAACGCUCUGCUCUCGUUUUGAUGAAAGUGCAGGCCAUUUCCAUCAUGGCUUU--CCUUUUUUUUUUUUUGG-------GGUUGUAUCUA
(..((((..---(((.((((((((((((((.........)).)))))))))))).)))(((((.......)))))...--................)-------)))..)..... ( -28.60)
>DroEre_CAF1 15625 83 - 1
AUGCCCUAG---CUGAAUUUUUAUUGAAUGCU-----CUCGUC-UGACGAAAGUGCAGACCAUUUCCAUCAUGGCU------------U--UUUCGG-------G--CGCCUCUA
..((((.((---((...........((.....-----.))(((-((((....)).)))))............))))------------.--....))-------)--)....... ( -20.60)
>DroYak_CAF1 16641 91 - 1
AUGCCCUAG---CUGAAUUUUUAUUGAACGCU-----CUCGUC-UGAUGAAAGUGCAGGCCAUUUCCAUCAUGGCUCU--CG--UGUUU--UUUUGG-------G--UGUAUCUA
((((((...---(((.(((((((((..(((..-----..))).-.))))))))).)))(((((.......)))))...--..--.....--....))-------)--)))..... ( -24.10)
>DroAna_CAF1 26251 107 - 1
AUACCCUCGCCGCUGAACUGUUAUUGAACGCG-----UUGGCC-UGAUGAAAGUGCAGCCAAGUUGGAU--UGGCCAUUUCUCUGUUUCUAUCAUGGCAUUCAGUGGUAUAGGUA
.((((...(((((((((..(((....)))...-----...(((-(((((((((((..(((((......)--))))))).......)))).)))).))).)))))))))...)))) ( -31.91)
>consensus
AUGCCCUAG___CUGAAUUUUUAUCGAACGCU_____CUCGUC_UGAUGAAAGUGCAGGCCAUUUCCAUCAUGGCUUU__C__UUUUUUUUUUUUGG_______GGUUGUAUCUA
....((......(((.((((((((((...((.........))..)))))))))).))).((((.......)))).....................)).................. (-10.41 = -10.50 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:03 2006