Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,813,592 – 11,813,693 |
Length | 101 |
Max. P | 0.719873 |
Location | 11,813,592 – 11,813,693 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.27 |
Mean single sequence MFE | -35.16 |
Consensus MFE | -23.74 |
Energy contribution | -24.54 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.20 |
Mean z-score | -1.91 |
Structure conservation index | 0.68 |
SVM decision value | 0.40 |
SVM RNA-class probability | 0.719873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11813592 101 + 22407834 GGGAUUAUUGGGUGAUUAGGCUUAAUUGGUGGCUAUCUCACUGAUGAGGCGAUGGCCGUCAGUUGGGCAAGGUAGUAAUGCAACACUUUUCACACAUCUUU ........((.((((..(((((((((((..(((((((.(.((....))).)))))))..)))))))))...(((....)))....))..)))).))..... ( -35.50) >DroSec_CAF1 2488 101 + 1 GGGAUUAUUUUGAGAUUGAGCCUAGUUGGUGGCUAUCUCACUGAUGAGGCGAUGGCCGCCAGUUGGGCGAGCUACUAGUGCAACACUUUUCACACAUCUUU (((((.....(((((.((.(((((..(((((((((((.(.((....))).)))))))))))..)))))..((.......))..))..)))))...))))). ( -36.20) >DroSim_CAF1 2487 101 + 1 GGGAUUAUUUUGAGAUUGCGCCUAGUUGGUUGCUAUCUCACUGGUGGGGCGAUGGCCGCCAGUUGGGCGAGCUAGUAGUGCAACACUUUUCACACAUCUUC (((((.....((((((.(((((.....)).))).))))))..((((..(((.((((((((.....)))).))))....)))..))))........))))). ( -34.40) >DroEre_CAF1 2554 101 + 1 GGGAUUGUGCCGAGAUUGGGCCUGAAUGGUGGCUAUCACACUGAUGGGGCGAUGGCCGCCAGUUGGGCGAGCAGUUAAGCCAACACUUUUCACACAUCUUU (((((((((..(((.....(((..(.(((((((((((.(.((....))).))))))))))).)..)))(.((......)))....)))..)))).))))). ( -38.20) >DroYak_CAF1 2549 101 + 1 GUGAUUAUGCCGAGAUUGGGCAAAUUUGGUGUCUAUCACACGGUUGGAGCGUUGGCCGCCAGUUGGGCGAGCAGUUGAGCCAACACUUUUCACACAUCUUU (((((.((((((((.((....)).))))))))..)))))...(((((..((...((((((.....)))).))...))..)))))................. ( -31.50) >consensus GGGAUUAUUCCGAGAUUGGGCCUAAUUGGUGGCUAUCUCACUGAUGGGGCGAUGGCCGCCAGUUGGGCGAGCUAGUAAUGCAACACUUUUCACACAUCUUU ...................((((((((((((((((((.(.(....)..).))))))))))))))))))................................. (-23.74 = -24.54 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:10:00 2006