Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,812,112 – 11,812,223 |
Length | 111 |
Max. P | 0.583530 |
Location | 11,812,112 – 11,812,223 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 78.29 |
Mean single sequence MFE | -37.75 |
Consensus MFE | -23.65 |
Energy contribution | -24.68 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.19 |
Mean z-score | -1.39 |
Structure conservation index | 0.63 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11812112 111 - 22407834 AGGGUGGCGGCGGU------GACAACUAUGAGAACCAGCAGAAUCUGCAGCACAUCUCCGAGCGAGAGGCGCUGGAGGGCGAGGAGGAUCCGUCGGUCGAUCCCACUGCAGCCACCA ..((((((.(((((------(.............((.((((...)))).((...(((((.((((.....)))))))))))..)).(((((........))))))))))).)))))). ( -47.90) >DroVir_CAF1 11264 111 - 1 AGGGCGGCAGUGGU------GAUAACUUUGAGAAUCAACAGAAUCUGCAGCACAUUUCGGAGCGUGAGGCGCUCGAGGGUGAAGAGGAUCCUUCGGUGGAUCCUACAGCAGCCACCA ..((.(((.(((.(------(.....((((........)))).....)).))).(((((.((((.....)))))))))((....(((((((......)))))))...)).))).)). ( -38.80) >DroGri_CAF1 10425 117 - 1 AGGGCGGCAGUGGCAGCAACGAUAACUUUGAGAAUCAACAGAAUCUGCAGCACAUCUCAGAGCGUGAGGCGCUCGAGGGUGAGGAGGAUCCAUCGGUGGAUCCCACAGCAGCUACAA .........(((((.((..(((.....)))(((.((....)).))))).((.(((((..(((((.....)))))..))))).(..(((((((....)))))))..).)).))))).. ( -41.60) >DroWil_CAF1 10357 111 - 1 AGGGCGGAAGUAAU------GAUAAUUUUGAAAAUCAACAGAAUCUGCAACACAUCUCCGAAAGGGAAGCCCUGGAGGGUGAAGAAGAUCCAUCGGUGGAUCCAACAGCGGCUACAA ...((....))...------....((((((........))))))((((..(((.(((((...((((...)))))))))))).....((((((....)))))).....))))...... ( -28.90) >DroMoj_CAF1 9191 108 - 1 AGGGCAACAGCGAU------ACG---GACAACAACCAACAUAAUCUGCAGCACAUCUCGGAGCGUGAGGCGCUCGAGGGUGAGGAGGAUCCCUCAGUGGAUCCAACGGCAGCAACCA .((((....))...------..(---(.......))........((((..(((.(((((.((((.....)))))))))))).(..((((((......))))))..).))))...)). ( -34.20) >DroAna_CAF1 9196 105 - 1 AGAGCGGC------------GAUAAUUUCGAGAACCAGCAGAAUCUGCAACACAUCUCCGAGCGUGAAGCCCUGGAGGGCGAAGAGGAUCCCUCGGUGGAUCCCACGGCGGCCACCA .....(((------------.........((((....((((...))))......))))((..((((..((((....)))).....((((((......)))))))))).))))).... ( -35.10) >consensus AGGGCGGCAGUGGU______GAUAACUUUGAGAACCAACAGAAUCUGCAGCACAUCUCCGAGCGUGAGGCGCUCGAGGGUGAAGAGGAUCCAUCGGUGGAUCCCACAGCAGCCACCA ..(((.((...................................(((....(((.(((((.((((.....)))))))))))).)))((((((......))))))....)).))).... (-23.65 = -24.68 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:59 2006