Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,810,926 – 11,811,023 |
Length | 97 |
Max. P | 0.844608 |
Location | 11,810,926 – 11,811,023 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.82 |
Mean single sequence MFE | -31.19 |
Consensus MFE | -24.37 |
Energy contribution | -24.21 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.10 |
Mean z-score | -1.90 |
Structure conservation index | 0.78 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11810926 97 + 22407834 UGGCUAAAAAGCCACCCGCAAAAGCUUAUGCAACCGGGUGGCCUACGAAAUGUAUC------------------UGAAUCUGUGU-----GCAAAAUCUGAUUCAGCGCAGAGCUACGGU (((((.....((((((((.....((....))...))))))))........(((..(------------------((((((.....-----.........))))))).))).))))).... ( -30.44) >DroSec_CAF1 18244 96 + 1 UGGCUAAAAAGCCACCCGCAA-AGCUUAUGCAACCGGGUGGCCUACGAAAUGUAUC------------------UGAAUCUGUGU-----GCAAAACCUGAUUCAGCGCUGAGCUACGGU (((((.....((((((((...-.((....))...)))))))).........((..(------------------((((((.(.((-----.....))).))))))).))..))))).... ( -31.50) >DroSim_CAF1 18203 96 + 1 UGGCUAAAAAGCCACCCGCAA-AGCUUAUGCAACCGGGUGGCCUACGAAAUGUAUC------------------UGAAUCUGUGU-----GCAAAAUCUGAUUCAGCGCUGAGCUACGGU (((((.....((((((((...-.((....))...)))))))).........((..(------------------((((((.....-----.........))))))).))..))))).... ( -29.54) >DroEre_CAF1 16945 101 + 1 UGGCUAAAAAGCCGCCCGCGA-AGUUUAUGCAAUCGGGUGGCCUACGAAAUGAAUC------------------UGAAUCUGAGUCAGAAUCUAAAUCUGAUUCAGCGGUGAGCUACGGU (((((.....((((((((...-.((....))...)))))))).............(------------------((...((((((((((.......)))))))))))))..))))).... ( -33.20) >DroYak_CAF1 17923 119 + 1 UGGCUAAAAAGCCUCCCGAAA-AGUUUACGCAACCGGGUGGCCUACAAAAUGAAUCUGUAUCUGUAUCUGUAUCUGAAUCUGAAUCGGAAUCUAAAUCUGAUUCAGCGGAGAGCUACGGU ..........(((.((((...-............)))).)))...................(((((.((...((((...((((((((((.......)))))))))))))).)).))))). ( -31.26) >consensus UGGCUAAAAAGCCACCCGCAA_AGCUUAUGCAACCGGGUGGCCUACGAAAUGUAUC__________________UGAAUCUGUGU_____GCAAAAUCUGAUUCAGCGCUGAGCUACGGU (((((.....((((((((.....((....))...))))))))................................((((((...................))))))......))))).... (-24.37 = -24.21 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:58 2006