Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,806,286 – 11,806,426 |
Length | 140 |
Max. P | 0.573690 |
Location | 11,806,286 – 11,806,386 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 86.46 |
Mean single sequence MFE | -31.52 |
Consensus MFE | -23.08 |
Energy contribution | -24.88 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.07 |
Mean z-score | -1.63 |
Structure conservation index | 0.73 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573690 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11806286 100 + 22407834 ----------UUUCAGUUUUGGUUCCACUUCCACACACACACACAAACACAUGCAUACUUGCAUACGUGUGUGGGAAGAACGGACAGGGGGGCAAAAGCAAAUCAAGCGA ----------.....(((((.(((((.(((((.(((((((..........(((((....)))))..))))))))))))..(.....).))))).)))))........... ( -29.50) >DroSec_CAF1 13606 110 + 1 CCAGUUUCGGUUUCAGUUUUGGUUCCACUUCCACACACACACACACAACCAUGCAUACUUGCAUACGUGUGUGGAAAGAGCGGAAAGGGGGGCGAAAGCAAAUCAAGCGA ...((((.(((((..(((((.(((((..((((.(.(...(((((((....(((((....)))))..)))))))....).).))))...))))).)))))))))))))).. ( -35.80) >DroSim_CAF1 13534 108 + 1 CCAGUUUCGGUUUCAGUUUUGGUUCCACUUCCACACAC--ACACACAGCCAUGCAUACUUGCAUACGUGUGUGGAAAGAGCGGAAAGGGGGGCGAAAGCAAAUCAAGCGA ....(((((.(..(..((((.((((...((((((((((--.(.....)..(((((....)))))..)))))))))).)))).)))).)..).)))))((.......)).. ( -35.50) >DroEre_CAF1 12542 104 + 1 CCAGUUUCGGUUUCAGUUUUGGUUCCACUUCCACACACUCAUA------CAUUCAUACUUGCAUACGUGUGUGGGAAAAGCGGACAGGGGGGCGAAAGCAAAUCAAGCGA ...((((.(((((..(((((.(((((..((((((((((..((.------((........)).))..))))))))))....(.....).))))).)))))))))))))).. ( -29.40) >DroYak_CAF1 13460 101 + 1 CCAGUUUCGGUUUCAGUUUUGGUUCCACUUCCACAAA--CAUA------CCUACAUACUUGCAUACGUGUGUGGAAAGAGCGGAC-GGGGGGCGAAAGCAAAUCAAGCGA ...((((.(((((..(((((.(((((.(.(((.(...--....------.((((((((........)))))))).....).))).-).))))).)))))))))))))).. ( -27.42) >consensus CCAGUUUCGGUUUCAGUUUUGGUUCCACUUCCACACAC_CACACA_A__CAUGCAUACUUGCAUACGUGUGUGGAAAGAGCGGACAGGGGGGCGAAAGCAAAUCAAGCGA ....(((((.(..(....((.((((...((((((((((............(((((....)))))..)))))))))).)))).))...)..).)))))((.......)).. (-23.08 = -24.88 + 1.80)
Location | 11,806,309 – 11,806,426 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 91.17 |
Mean single sequence MFE | -27.93 |
Consensus MFE | -20.02 |
Energy contribution | -20.02 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.04 |
Mean z-score | -1.81 |
Structure conservation index | 0.72 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11806309 117 + 22407834 CACACACACACAAACACAUGCAUACUUGCAUACGUGUGUGGGAAGAACGGACAGGGGGGCAAAAGCAAAUCAAGCGAAAAUUUAUUUGCAGUCAAUAUAUGUAUAUGUACAUCCAUA ....(((((((......(((((....)))))..)))))))(((......(((.((...((....))...))..(((((......))))).)))......((((....)))))))... ( -27.90) >DroSec_CAF1 13639 117 + 1 CACACACACACACAACCAUGCAUACUUGCAUACGUGUGUGGAAAGAGCGGAAAGGGGGGCGAAAGCAAAUCAAGCGAAAAUUUAUUUGCAGUCAAUAUAUGUAUAUGUACAUCCAUA ......(((((((....(((((....)))))..)))))))........(((..((...((....))...))..(((((......)))))..........((((....)))))))... ( -29.20) >DroSim_CAF1 13567 115 + 1 CACAC--ACACACAGCCAUGCAUACUUGCAUACGUGUGUGGAAAGAGCGGAAAGGGGGGCGAAAGCAAAUCAAGCGAAAAUUUAUUUGCAGUCAAUAUAUGUAUAUGUACAUCCAUA ....(--((((((....(((((....)))))..)))))))........(((..((...((....))...))..(((((......)))))..........((((....)))))))... ( -29.20) >DroEre_CAF1 12575 111 + 1 CACACUCAUA------CAUUCAUACUUGCAUACGUGUGUGGGAAAAGCGGACAGGGGGGCGAAAGCAAAUCAAGCGAAAAUUUAUUUGCAGUCAAUAUAUGUAUAUGUACAUACAUG ....((((((------(((..............))))))))).......(((.((...((....))...))..(((((......))))).)))....(((((((......))))))) ( -25.44) >consensus CACACACACACACA_CCAUGCAUACUUGCAUACGUGUGUGGAAAGAGCGGAAAGGGGGGCGAAAGCAAAUCAAGCGAAAAUUUAUUUGCAGUCAAUAUAUGUAUAUGUACAUCCAUA .(((...............(((....)))((((((((((.((...........((...((....))...))..(((((......)))))..)).)))))))))).)))......... (-20.02 = -20.02 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:54 2006