Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,805,957 – 11,806,055 |
Length | 98 |
Max. P | 0.979638 |
Location | 11,805,957 – 11,806,055 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 93.37 |
Mean single sequence MFE | -23.16 |
Consensus MFE | -20.92 |
Energy contribution | -20.88 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.06 |
Mean z-score | -1.67 |
Structure conservation index | 0.90 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11805957 98 - 22407834 CACAUGAGGUAAGUGAUUUCAAUUGCUGCAGCUUUCACAUCAAAUUACAGGGUGACUUUGCCACUCACCACCCAAAGGGGUUAUUCAACCCCAUUCGA ....((.(((..(((((((.....((....)).........)))))))..(((((.........))))))))))..((((((....))))))...... ( -22.64) >DroSec_CAF1 13272 98 - 1 CACAUGAGGUAAGUGAUUUCAAUUGCUGCUGUUUUCACAUCAAAAUACAGGGUGACUUUGCAUCUCACCACCCAAAGGGGUUAUUCAACCCCAUUCGA ....((.(((..((((...((........))...))))............(((((.........))))))))))..((((((....))))))...... ( -23.00) >DroSim_CAF1 13205 94 - 1 ----UGAGGUAAGUGAUUUCAAUUGCUGCUGUUUUCACAUCAAAAUACAGGGUGACUUUGCCGCUCACCACCCAAAGGGGUUAUUCAACCCCAUUCGA ----((.(((..((((...((........))...))))............((((((......).))))))))))..((((((....))))))...... ( -23.30) >DroEre_CAF1 12208 98 - 1 CACAUGAGGUAAGUGAUUUCAAUUGCCGCUGCUUUCACAUCAAAAUACAGGGUGACUUUACCGCUCACCACCCAAAGGGGUUAUUCAACCCCAUUUGA .......(((((.((....)).)))))............(((((.....(((((..............)))))...((((((....)))))).))))) ( -25.64) >DroYak_CAF1 13127 98 - 1 CACAUGAGGUAAGUGAUUUCAAUUGCCGCUGCUUUCACAUCAAAAUACAGGGUGACUUUACCCCUCACCACCCAAAGGGUUUAUUCAACCCCAUUUGA .......(((((.((....)).)))))............(((((.....(((((..............)))))...(((((.....)))))..))))) ( -21.24) >consensus CACAUGAGGUAAGUGAUUUCAAUUGCUGCUGCUUUCACAUCAAAAUACAGGGUGACUUUGCCGCUCACCACCCAAAGGGGUUAUUCAACCCCAUUCGA .......(((((.((....)).)))))......................(((((..............)))))...((((((....))))))...... (-20.92 = -20.88 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:52 2006