Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,805,195 – 11,805,296 |
Length | 101 |
Max. P | 0.967999 |
Location | 11,805,195 – 11,805,296 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -33.68 |
Consensus MFE | -28.30 |
Energy contribution | -28.34 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.96 |
Structure conservation index | 0.84 |
SVM decision value | 1.62 |
SVM RNA-class probability | 0.967999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11805195 101 + 22407834 GAAAAGUGGGCGGGUUUCGUUUCGGGCAUGAAAAGUACUGAUGAAGCCAAGCACAGAACGCAAGACAAAUGGCCCAAUCUACAAAGGGGCUGGACC-CCCGC ......(((((.(((((((..((((...(....)...)))))))))))..........(....).......))))).........((((......)-))).. ( -29.70) >DroSec_CAF1 12597 101 + 1 GAAAAGUGGGCGGGUUUCGUUUCGGGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAACGCAAGACAAAUGGCCCAAUCUACAAAGGGGCUGGACC-CCCGC ......(((((.(((((((((...(((((.....))))))))))))))..........(....).......))))).........((((......)-))).. ( -33.50) >DroSim_CAF1 12529 101 + 1 GAAAAGUGGGCGGGUUUCGUUUCGGGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAACGCAAGACAAAUGGCCCAAUCUACAAAGGGGCUGGACC-CCCGC ......(((((.(((((((((...(((((.....))))))))))))))..........(....).......))))).........((((......)-))).. ( -33.50) >DroEre_CAF1 11362 102 + 1 AAAAAGUGGGCGGGUUUCGUUUCGAGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAACGCAAGACAAAUGGCCCAAUCUGCAAAGGGGGUGGACCCCCCGC ......(((((.(((((((((...(((((.....))))))))))))))..........(....).......))))).........(((((....)))))... ( -36.90) >DroYak_CAF1 12352 101 + 1 AAAAAGUGGGCGGGUUUCGUUUGGGGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAGCACAAGACAAAUGGCCCAAUCUGAAAAGGGGGUGGACU-CCCGC ......(((((.(((((((((...(((((.....))))))))))))))..((.....))............))))).........(((((....))-))).. ( -34.80) >consensus GAAAAGUGGGCGGGUUUCGUUUCGGGCAUGUAAAGUGCUGAUGAAGCCAAGCACAGAACGCAAGACAAAUGGCCCAAUCUACAAAGGGGCUGGACC_CCCGC ......(((((.(((((((((...(((((.....))))))))))))))..........(....).......)))))..........(((........))).. (-28.30 = -28.34 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:51 2006