| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,803,331 – 11,803,436 |
| Length | 105 |
| Max. P | 0.670214 |
| Location | 11,803,331 – 11,803,436 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.27 |
| Mean single sequence MFE | -38.35 |
| Consensus MFE | -26.64 |
| Energy contribution | -26.62 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.670214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11803331 105 - 22407834 CAGCACGUGAGCGCUGCCAGCUCGGUGCCAUCAGUAGUAACUCCUGUUGUGACCACUGGUGGGACAACGAUCACAUUGGGCGG---CCCACCACCGC------------UCCCUAAAUCC ((((.(....).))))...(.(((((.((((((((.((.((.......)).)).)))))))).))..))).).....((((((---.......))))------------))......... ( -35.10) >DroPse_CAF1 15001 105 - 1 CAGCACGUGAGCGUUGCCAGCUCGGUGCCAUCAGUUGUAGCCCCGGUCGUGACCACUGGUGGAACCACCAUCACCCUCGGCGG---ACCGCCGCCCU------------UGCCUAAAUCU ..(((...((((.......))))(((.((((((((.((.((....))....)).)))))))).)))............(((((---....)))))..------------)))........ ( -35.20) >DroSim_CAF1 10678 105 - 1 CAGCACGUGAGCGCUGCCAGCUCUGUGCCAUCAGUAGUAACUCCUGUUGUGACCACUGGUGGGACAACGAUUACAUUGGGCGG---CCCACCACCGC------------UUCCUAAAUCC ((((.(....).)))).......(((.((((((((.((.((.......)).)).)))))))).)))..((((.....((((((---.......))))------------))....)))). ( -34.20) >DroWil_CAF1 15742 120 - 1 CAGCACGUAAGCGCUGCCAGUUCGGUACCAUCGGUAAUUGCACCGGUGGUUACCACUGGAGGCACCACCAUUACCUUAGGCGGUGGUCCACCACCGCCAUCCUCAUCCUUGGCCAAAUCC ((((.(....).))))(((((..((((((((((((......)))))))).))))))))).(((...............((((((((....)))))))).....((....)))))...... ( -53.90) >DroYak_CAF1 10590 105 - 1 CAGCACGUGAGCGCUGCCAGCUCGGUGCCAUCAGUAGUAACUCCUGUUGUGACCACUGGUGGGACAACGAUCACCUUGGGCGG---ACCACCACCGC------------UCCCUAAAUCC ((((.(....).))))...(.(((((.((((((((.((.((.......)).)).)))))))).))..))).).....((((((---.......))))------------))......... ( -35.10) >DroPer_CAF1 14872 105 - 1 CAGCACGUGAGCGCUGCCAGCUCGGUGCCAUCAGUUGUAGCCCCGGUCGUGACCACUGGUGGAACCACCAUCACCCUCGGCGG---ACCGCCGCCCU------------UGCCUAAAUCU ((((.(....).))))...((..(((.((((((((.((.((....))....)).)))))))).)))............(((((---....)))))..------------.))........ ( -36.60) >consensus CAGCACGUGAGCGCUGCCAGCUCGGUGCCAUCAGUAGUAACUCCGGUUGUGACCACUGGUGGGACAACCAUCACCUUGGGCGG___ACCACCACCGC____________UGCCUAAAUCC ((((.(....).)))).......(((.((((((((.((.((.......)).)).)))))))).)))............((.((....)).))............................ (-26.64 = -26.62 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:50 2006