| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,796,369 – 11,796,465 |
| Length | 96 |
| Max. P | 0.691434 |
| Location | 11,796,369 – 11,796,465 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 75.48 |
| Mean single sequence MFE | -12.39 |
| Consensus MFE | -9.31 |
| Energy contribution | -9.20 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.15 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11796369 96 + 22407834 AACAAUCGGAU---AUCACA-AAAACCAUAU-CGAUCGACCCAAACAAAGUCACG-----CGCCGCCUGGCACACAUUUCAAAAAUGUAGAAAACACGUGAAUAAA ..(.((((.((---((....-......))))-)))).)............(((((-----.(((....)))..(((((.....)))))........)))))..... ( -13.70) >DroPse_CAF1 8226 100 + 1 ---GGAAAACCCCUCUCCU--AAUACCAAACACCAUCCUGA-CAACAAAAUCGCGCAAACCGCCGCCUUGCACACAUUUCAGAAAUGUUGAAAACACGUGGAAUAA ---(((.........))).--...........((((.....-(((((...(((((.....))).((...))..........))..))))).......))))..... ( -10.00) >DroSim_CAF1 3776 96 + 1 AACAAUCGGAU---AUCACA-AAAACCAUAU-CGAUCGAACCAAACAAAGUCACG-----CGCCGCCUGGCACACAUUUCAAAAAUGUAGAAAACACGUGAAUAAA ..(.((((.((---((....-......))))-)))).)............(((((-----.(((....)))..(((((.....)))))........)))))..... ( -13.70) >DroEre_CAF1 3707 96 + 1 AACAACUGGAU---GUUACA-AAAACCCUAU-CAAUUGACCCAAACAAAAUCACG-----CGCCGCCUGGCACACAUUUCAAAAAUGUAGAAAACACGUGAAUAAA ..(((.(((..---(((...-..)))....)-)).)))............(((((-----.(((....)))..(((((.....)))))........)))))..... ( -12.50) >DroYak_CAF1 3732 97 + 1 AACAACUGGAU---AUCACACAAAACCAAAU-CGAUCGACCCAAACAAAAUCACG-----CGCCGCCUGGCACACAUUUCAAAAAUGUUGAAAACACGUGAAUAAA ......(((..---(((..............-.)))....))).......(((((-----.(((....))).....((((((.....))))))...)))))..... ( -12.86) >DroPer_CAF1 8271 100 + 1 ---GGAAAACCCCUCUCCU--AAUACCAAACACGAUCCUGA-CAACAAAAUCGCGCAAACCGCCGCCUUGCACACAUUUCAGAAAUGUUGAAAACACGUGGAAUAA ---(((.........))).--.........((((.......-..........(.((((.........)))).)...((((((.....))))))...))))...... ( -11.60) >consensus AACAAAAGGAU___AUCACA_AAAACCAAAU_CGAUCGACCCAAACAAAAUCACG_____CGCCGCCUGGCACACAUUUCAAAAAUGUAGAAAACACGUGAAUAAA ..................................................(((((......(((....)))..(((((.....)))))........)))))..... ( -9.31 = -9.20 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:31 2006