Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,233,346 – 1,233,504 |
Length | 158 |
Max. P | 0.545073 |
Location | 1,233,346 – 1,233,464 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -42.02 |
Consensus MFE | -30.06 |
Energy contribution | -31.13 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.03 |
Mean z-score | -2.21 |
Structure conservation index | 0.72 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506431 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1233346 118 + 22407834 AAAGAUGCGAGAACAGCUCAAUGUUAAUGGCCAAGAUUAAGGGUCUGGGCAAGUCCUGCUCCUGCAGGACUCUCCAUUUCCUUG--GCCUUAGCUCCGAGCUUAGCGCCUUCCCGUCUGC ..(((((.(((..((((((...(((((.(((((......((((..((((..((((((((....)))))))).))))..))))))--))))))))...)))))....)..))).))))).. ( -46.20) >DroSec_CAF1 10678 118 + 1 AAAGCUGCGCGAACAACUCAAUGUUAAUGGCCAAGAUUAAGGGGCUGGGCAAGUCCUGCUCCUGCAGGACUCUCCAUUUCCUUG--GCCUUAGCUCCGAGCUUAGCGCCUUCCCGUCUGC ......((((......(((...(((((.(((((......(((((.((((..((((((((....)))))))).)))).)))))))--))))))))...)))....))))............ ( -44.00) >DroSim_CAF1 6496 118 + 1 AAAGCUGCGAGAACAACUCAAUGUUAAUGGCCAAGAUUAAGGGGCUGGGCAAGUCCUGCUCCUGCAGGACUCUCCAUUUCCUUG--GCCUUAGCUCCGAGCUUAACGCCUUCCCGUCUGC .(((((.((((.....)))...(((((.(((((......(((((.((((..((((((((....)))))))).)))).)))))))--))))))))...))))))................. ( -41.40) >DroYak_CAF1 6620 118 + 1 -AAGGUGUGAGAACAACUCAAUGUUAAUGGCCAAGAUUAAGGGGCUGGGCAAGACGUCCUCCAGCAGGACUCGCCAUUUCCUUGCUGCCUUAGCUGCAAGCUUAGCGCCU-CCCGUCUGC -..(((.....((((......))))....))).((((..(((.(((((((..((.(((((.....))))))).........((((.((....)).))))))))))).)))-...)))).. ( -36.50) >consensus AAAGCUGCGAGAACAACUCAAUGUUAAUGGCCAAGAUUAAGGGGCUGGGCAAGUCCUGCUCCUGCAGGACUCUCCAUUUCCUUG__GCCUUAGCUCCGAGCUUAGCGCCUUCCCGUCUGC ......(((..((...(((...(((((.(((......(((((((.(((...((((((((....))))))))..))).)))))))..))))))))...))).))..)))............ (-30.06 = -31.13 + 1.06)
Location | 1,233,386 – 1,233,504 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.96 |
Mean single sequence MFE | -33.60 |
Consensus MFE | -26.33 |
Energy contribution | -27.20 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.07 |
Mean z-score | -2.06 |
Structure conservation index | 0.78 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.545073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1233386 118 + 22407834 GGGUCUGGGCAAGUCCUGCUCCUGCAGGACUCUCCAUUUCCUUG--GCCUUAGCUCCGAGCUUAGCGCCUUCCCGUCUGCUUUCAGCACAAUAAACAAAAAGUAAUUUUCACAAAUUUGC (((....((..((((((((....))))))))..))........(--((((.(((.....))).)).)))..)))(((((....))).))............................... ( -33.10) >DroSec_CAF1 10718 118 + 1 GGGGCUGGGCAAGUCCUGCUCCUGCAGGACUCUCCAUUUCCUUG--GCCUUAGCUCCGAGCUUAGCGCCUUCCCGUCUGCUUUCAGCACAAUAAACAAAAAGUAAUUUUCACAAAUUUGC ((((((((((.((((((((....))))))))...((......))--))).)))))))((((...(((......)))..))))...(((.(((.....((((....)))).....)))))) ( -35.70) >DroSim_CAF1 6536 118 + 1 GGGGCUGGGCAAGUCCUGCUCCUGCAGGACUCUCCAUUUCCUUG--GCCUUAGCUCCGAGCUUAACGCCUUCCCGUCUGCUUUCAGCACAAUAAACAAAAAGUAAUUUUCACAAAUUUGC ((((((((((.((((((((....))))))))...((......))--))).)))))))((((...(((......)))..))))...(((.(((.....((((....)))).....)))))) ( -35.40) >DroYak_CAF1 6659 119 + 1 GGGGCUGGGCAAGACGUCCUCCAGCAGGACUCGCCAUUUCCUUGCUGCCUUAGCUGCAAGCUUAGCGCCU-CCCGUCUGCUUUCAGCACAAUAAACAAAAAGUAAUUUUCACAAAUUUGC ((.(((((((..((.(((((.....))))))).........((((.((....)).))))))))))).)).-...(((((....))).))............................... ( -30.20) >consensus GGGGCUGGGCAAGUCCUGCUCCUGCAGGACUCUCCAUUUCCUUG__GCCUUAGCUCCGAGCUUAGCGCCUUCCCGUCUGCUUUCAGCACAAUAAACAAAAAGUAAUUUUCACAAAUUUGC ((((((((((.((((((((....))))))))...((......))..))).)))))))((((...(((......)))..))))...................................... (-26.33 = -27.20 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:23 2006