Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 181,567 – 181,660 |
Length | 93 |
Max. P | 0.525480 |
Location | 181,567 – 181,660 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 82.85 |
Mean single sequence MFE | -32.69 |
Consensus MFE | -20.73 |
Energy contribution | -21.93 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.73 |
Structure conservation index | 0.63 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525480 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 181567 93 + 22407834 UGCUGCAGUCGAAUUCUCUGCC------------UCUGGCGCUGCUCGCCAACUUAUGUGAC-CUGAGCAGAGGGCUGGAAAAUGCUGCAUUCAGCUCCACCACCA---------- (((.(((.((.(.((((((((.------------(((((((.....)))))((....))...-..)))))))))).).))...))).)))................---------- ( -27.50) >DroSec_CAF1 28432 94 + 1 UGCUGCAGUCGAAUUCUCUGCC------------UCUGGCGCUGCUCGCCAAAUUCUGUGACCCUGAGCAGAGGGCUGGAAACUGCUGCAUUCAGCUCCACCACCA---------- (((.(((((....((((..(((------------(.(((((.....)))))...(((((........))))))))).))))))))).)))................---------- ( -29.10) >DroSim_CAF1 28764 93 + 1 UGCUGCAGUCGAAUUCUCUGCC------------UCUGGCGCUGCUCGCCAACUUCUGUGAC-CUGAGCAGAGGGCUGGAAACUGCUGCAUUCAGCUCCUCCACCA---------- (((.(((((....((((..(((------------(.(((((.....)))))...(((((...-....))))))))).))))))))).)))................---------- ( -28.80) >DroEre_CAF1 32001 111 + 1 UGCUGCAGUCGAAUUCUCUGCCUCUGCCUCUGCUUCUGUCGCUGCUCGCCAAAUGCUGUGAC-CUGAGCAGAGGGCUGGAAACUGCAGCAUUCAGCUCCACAACCACCACCA---- (((((((((....((((..(((.....((((((((..(((((.((.........)).)))))-..))))))))))).)))))))))))))......................---- ( -41.80) >DroYak_CAF1 29684 114 + 1 UGCUGCAGUCGAAUUCUCUGCC-CUGCCUCUGCCUCUGUCUCUGCUCUCCAAAUGCUGUGAC-CUGAGCAGAGGGCUGAAAACUGCAGCAUUGAGCUCCACCACCACCACUAGCAC (((((((((....(((...(((-(....(((((.((.(((.(.((.........)).).)))-..))))))))))).))).)))))))))....(((..............))).. ( -36.24) >consensus UGCUGCAGUCGAAUUCUCUGCC____________UCUGGCGCUGCUCGCCAAAUUCUGUGAC_CUGAGCAGAGGGCUGGAAACUGCUGCAUUCAGCUCCACCACCA__________ (((.((((((.(.(((((((((..............(((((.....)))))..............).)))))))).).))..)))).))).......................... (-20.73 = -21.93 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:58 2006