Locus 4097

Sequence ID 2L_DroMel_CAF1
Location 11,785,375 – 11,785,487
Length 112
Max. P 0.957425
window6458

overview

Window 8

Location 11,785,375 – 11,785,487
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.59
Mean single sequence MFE -27.24
Consensus MFE -20.58
Energy contribution -21.18
Covariance contribution 0.60
Combinations/Pair 1.14
Mean z-score -2.49
Structure conservation index 0.76
SVM decision value 1.48
SVM RNA-class probability 0.957425
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11785375 112 + 22407834
GCCAACAGCAAACAAACACAAGCUGAAAUGCUUUUCGAAUGUAAAUUCUC--------AAGUUCGGUAUGCCAAUAUCUCGGCGGCUUUUAAGCAGCUAAACAUUUGGUCAGCAAACAAA
.....((((............))))...((((..((((((((........--------......(((((....)))))..(((.(((....))).)))..))))))))..))))...... ( -25.30)
>DroSec_CAF1 43120 112 + 1
GCCAACAGCAAACAAACACAAGCUGAAAUGCUUUUCGAAUGUAAAUUCUC--------AAGUUGGUUAUGCCAAUAUCUCGGCGGCUUUUAAGCAGCUAAACAUUUGGUCAGCAAACAAA
.....((((............))))...((((..((((((((........--------..(((((.....))))).....(((.(((....))).)))..))))))))..))))...... ( -27.50)
>DroSim_CAF1 42329 112 + 1
GCCAACAGCAAACAAACACAAGCUGAAAUGCUUUUCGAAUGUAAAUUCUC--------AAGUUGGUUAUGCCAAUAUCUCGGCGGCUUUUAAGCAGCUAAACAUUUGGUCAGCAAACAAA
.....((((............))))...((((..((((((((........--------..(((((.....))))).....(((.(((....))).)))..))))))))..))))...... ( -27.50)
>DroEre_CAF1 53526 120 + 1
GCCAUCAGCAAAUACACACAAGCUAAAAUGCUACUCAAAUGUAAAGUCGCAUGUGCACAACUUAGGUAUGCCAAUAUCUCGGUGGCUUUUAAGCAGCUAAACAUUUGGUCAGCAAACAAA
......(((............)))....((((((.(((((((..(((.((.((.((...(((.((((((....)))))).))).))...)).)).)))..))))))))).))))...... ( -27.50)
>DroYak_CAF1 45127 120 + 1
GCCAUCAGCAAACAAACACAAGCUGAAAUGCAUUUCAAAUGUAAAUUCCCAUUUGCACAACUUAGGUAUGCCAAUAUCUAGGUGGAUUUUAUCCAGCCAAACAUUUGGUCAGCAAACAAG
....(((((............)))))..(((...((((((((.................((((((((((....))))))))))((((...))))......))))))))...)))...... ( -28.40)
>consensus
GCCAACAGCAAACAAACACAAGCUGAAAUGCUUUUCGAAUGUAAAUUCUC________AAGUUAGGUAUGCCAAUAUCUCGGCGGCUUUUAAGCAGCUAAACAUUUGGUCAGCAAACAAA
.....((((............))))...((((..((((((((.....................((((((....)))))).(((.(((....))).)))..))))))))..))))...... (-20.58 = -21.18 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:18 2006