Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,783,832 – 11,783,926 |
Length | 94 |
Max. P | 0.981655 |
Location | 11,783,832 – 11,783,926 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.06 |
Mean single sequence MFE | -19.64 |
Consensus MFE | -18.22 |
Energy contribution | -18.30 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -1.65 |
Structure conservation index | 0.93 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11783832 94 - 22407834 GGCAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAGAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGCGAAA ((((((((...(((....)))...)))))..((((((((..((..........))..))))))))..)))..........(((.....)))... ( -21.00) >DroSec_CAF1 41612 91 - 1 ---AUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGCGAAA ---.((((......((((((....)))))).((((((((..((..........))..))))))))((((............))))...)))).. ( -20.80) >DroSim_CAF1 40706 94 - 1 GGCAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGCGAAA ((((((((...(((....)))...)))))..((((((((..((..........))..))))))))..)))..........(((.....)))... ( -21.00) >DroEre_CAF1 51982 94 - 1 GACAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGGAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGGGAAA ...(((((...(((....)))...)))))..((((((((..((..........))..))))))))((((............))))......... ( -17.90) >DroYak_CAF1 43575 94 - 1 GGCAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGUUGAUAGGGAAA ((((((((...(((....)))...)))))..((((((((..((..........))..))))))))..)))........................ ( -17.50) >consensus GGCAUUGCAUAUGUAAUUGCAGCAGCAAUUUUGAAGCAAAAGCAACAAAGAAAGCGCUUGUUUCACAGCUAAUAUUUAAACGCUGAAAGCGAAA ....((((......((((((....)))))).((((((((..((..........))..))))))))((((............))))...)))).. (-18.22 = -18.30 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:13 2006