Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,783,233 – 11,783,346 |
Length | 113 |
Max. P | 0.920503 |
Location | 11,783,233 – 11,783,346 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -40.18 |
Consensus MFE | -34.74 |
Energy contribution | -34.78 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.07 |
Mean z-score | -1.53 |
Structure conservation index | 0.86 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.891715 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11783233 113 + 22407834 CUCCUCGACUUUUCCCCAGGCGACUUGCCUUUG------CCUUUGCGUUUGACACUUUUCCACAGUAACGGAAGUGGGACUGCUGGGGAACUAUCAAAGUGCACCUAGGCGAGGGGGAC ...........((((((((((.....))))(((------(((.(((((((((.(.((..(((((((.((....))...)))).)))..)).).))))).))))...)))))))))))). ( -44.90) >DroSec_CAF1 40973 110 + 1 CUCCUCGACUUUUCCCCAGGCGACUUGCCUUUG------CCUUUGCGUUUGACACUUUUCCACAGUAACGGAAGUGGGGCUGCUGGGGAACUAUCAAAGUGCACCUAGAC---GGGGAC ............(((((((((((.......)))------))).(((((((((.(.((..(((((((.((....))...)))).)))..)).).))))).)))).......---))))). ( -38.00) >DroSim_CAF1 40067 110 + 1 CUCCUCGACUUUUCCCCAGGCGACUUGCCUUUG------CCUUUGCGUUUGACACUUUUCCACAGUAACGGAAGUGGGGCUGCUGGGGAACUAUCAAAGUGCACCUAGAC---GGGGAC ............(((((((((((.......)))------))).(((((((((.(.((..(((((((.((....))...)))).)))..)).).))))).)))).......---))))). ( -38.00) >DroEre_CAF1 51343 109 + 1 CUCCUCGACUUUUCCCCAGGCGACUUGCCUUUG------CGUUUGCGUUUGACACUUUUCCGCAGUAACGGAAGUGG-GCUGCUGGGGAACUAUCAAAGUGCACCUAGAC---GGGGAC ............(((((((((.....))))...------.((((((((((((.(.((..(((((((.((....))..-))))).))..)).).))))).))))....)))---))))). ( -38.70) >DroYak_CAF1 42856 115 + 1 CUCCUCGACUUUUCCCCAGGCGACUUGCCUUUGCGAGUGCGUUUGCGUUUGACACUUUUCCGCAGAAACGGAAGUGG-GCUGCUGGGGAACUAUCAUAGUGCACCUAGAC---GGGGAC .((((((....((((((((((.((((((....))))))))(((..((.....)....(((((......))))))..)-))..))))))))...((.(((.....))))))---))))). ( -41.30) >consensus CUCCUCGACUUUUCCCCAGGCGACUUGCCUUUG______CCUUUGCGUUUGACACUUUUCCACAGUAACGGAAGUGGGGCUGCUGGGGAACUAUCAAAGUGCACCUAGAC___GGGGAC ............(((((((((.....)))).............(((((((((.(.((..(((((((.((....))...)))).)))..)).).))))).))))..........))))). (-34.74 = -34.78 + 0.04)
Location | 11,783,233 – 11,783,346 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -38.56 |
Consensus MFE | -33.98 |
Energy contribution | -33.94 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.52 |
Structure conservation index | 0.88 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.920503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11783233 113 - 22407834 GUCCCCCUCGCCUAGGUGCACUUUGAUAGUUCCCCAGCAGUCCCACUUCCGUUACUGUGGAAAAGUGUCAAACGCAAAGG------CAAAGGCAAGUCGCCUGGGGAAAAGUCGAGGAG .(((((...((((...(((..(((((((.((..(((.((((..(......)..)))))))..)).))))))).))).)))------)..((((.....)))))))))............ ( -38.80) >DroSec_CAF1 40973 110 - 1 GUCCCC---GUCUAGGUGCACUUUGAUAGUUCCCCAGCAGCCCCACUUCCGUUACUGUGGAAAAGUGUCAAACGCAAAGG------CAAAGGCAAGUCGCCUGGGGAAAAGUCGAGGAG (..((.---.....))..).(((((((..((((((....(((((((..........))))....(((.....)))...))------)..((((.....))))))))))..))))))).. ( -38.90) >DroSim_CAF1 40067 110 - 1 GUCCCC---GUCUAGGUGCACUUUGAUAGUUCCCCAGCAGCCCCACUUCCGUUACUGUGGAAAAGUGUCAAACGCAAAGG------CAAAGGCAAGUCGCCUGGGGAAAAGUCGAGGAG (..((.---.....))..).(((((((..((((((....(((((((..........))))....(((.....)))...))------)..((((.....))))))))))..))))))).. ( -38.90) >DroEre_CAF1 51343 109 - 1 GUCCCC---GUCUAGGUGCACUUUGAUAGUUCCCCAGCAGC-CCACUUCCGUUACUGCGGAAAAGUGUCAAACGCAAACG------CAAAGGCAAGUCGCCUGGGGAAAAGUCGAGGAG (..((.---.....))..).(((((((..((((((.((...-....((((((....))))))..(((.....)))....)------)..((((.....))))))))))..))))))).. ( -39.20) >DroYak_CAF1 42856 115 - 1 GUCCCC---GUCUAGGUGCACUAUGAUAGUUCCCCAGCAGC-CCACUUCCGUUUCUGCGGAAAAGUGUCAAACGCAAACGCACUCGCAAAGGCAAGUCGCCUGGGGAAAAGUCGAGGAG (..((.---.....))..).((.((((..((((((.((...-.(((((((((....)))))..))))......((....))....))..((((.....))))))))))..)))).)).. ( -37.00) >consensus GUCCCC___GUCUAGGUGCACUUUGAUAGUUCCCCAGCAGCCCCACUUCCGUUACUGUGGAAAAGUGUCAAACGCAAAGG______CAAAGGCAAGUCGCCUGGGGAAAAGUCGAGGAG (..((.........))..).(((((((..((((((.((.....((((((((......))))..))))......))..............((((.....))))))))))..))))))).. (-33.98 = -33.94 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:10 2006