Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,780,298 – 11,780,402 |
Length | 104 |
Max. P | 0.661251 |
Location | 11,780,298 – 11,780,402 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.76 |
Mean single sequence MFE | -33.02 |
Consensus MFE | -16.15 |
Energy contribution | -17.04 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.17 |
Mean z-score | -1.93 |
Structure conservation index | 0.49 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661251 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11780298 104 - 22407834 GGCCAACGUUAAGCGGCAGAAAC-UGGCCAAAAAAGGAAAUGGGCAUGCGGGG---------ACCGGAGAUGCAGAU------GCAAUGCAAUGGCAAUUGUCGCUCAUUGGCCGAAAUG ((((((.(...((((((((....-((.(((..........))).))((((...---------.)......((((...------....))))...))).))))))))).))))))...... ( -31.60) >DroSec_CAF1 38233 103 - 1 GGCCAACGUUAAGUGGCAGAAAC-UGGCCAAA-AAGGAAAUGGGCAUGCGGGG---------ACCGGCGAUGCAGAU------GCAAUGCAAUGGCAAUUGUCGCUCAUUGGCCGAAAUG ((((..(.((...((((......-..))))..-)).).(((((((..(.(...---------.))((((((((...(------((...)))...)).)))))))))))))))))...... ( -34.00) >DroSim_CAF1 37328 103 - 1 GGCCAACGUUAAGCGGCAGAAAC-UGGCCAAA-AAGGAAAUGGGCAUGCGGGG---------AGCGGCGAUGCAGAU------GCAAUGCAAUGGCAAUUGUCGCUCAUUGGCCGAAAUG ((((((.......(.(((....(-((.((...-..))...)))...))).).(---------(((((((((((...(------((...)))...)).)))))))))).))))))...... ( -37.10) >DroEre_CAF1 48570 102 - 1 GGCCAACGUUAAGCGCCAGAAAC-UGGCGAA--AAGGAAACGGCCAUGCGGGA---------ACCGGAAAAGCAGAC------GCAAUGCAAUGGCAAUUGUCGCUCAUUGGCCGAAAUG ((((((.(...((((((((...)-))))((.--..(....).(((((.(((..---------.))).....(((...------....))).))))).....)))))).))))))...... ( -33.60) >DroYak_CAF1 39920 117 - 1 GGCCAACGUUAAGCGGCAGAAAG-UGGCCAA--AAGCAAACGGGUAUGCGGGGAUACUGGAAAACGGAGAUGCAGAUGCAGUUGCAGUGCAAUGGCAAUUGUCGCUCAUUGGCCGAAAUG ((((((.(...((((((((....-..((((.--.......(.(((((......))))).)..........((((..(((....))).)))).))))..))))))))).))))))...... ( -37.60) >DroAna_CAF1 39779 85 - 1 GACCCA----AAGAGCCAGAACUGCGGCCGG--AAGAAGACGA---------------------CGACGAUGGCGAG----UUG----GUAGCGACAAUUGUCGCUUAUUGGCCGAAAUG ......----....((((......((..((.--.......)).---------------------))....))))(.(----(..----((((((((....))))).)))..)))...... ( -24.20) >consensus GGCCAACGUUAAGCGGCAGAAAC_UGGCCAA__AAGGAAACGGGCAUGCGGGG_________ACCGGAGAUGCAGAU______GCAAUGCAAUGGCAAUUGUCGCUCAUUGGCCGAAAUG ((((((.....((((((((.......((((..........((......................))....((((.............)))).))))..))))))))..))))))...... (-16.15 = -17.04 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:08 2006