Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,779,109 – 11,779,247 |
Length | 138 |
Max. P | 0.979640 |
Location | 11,779,109 – 11,779,214 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 95.98 |
Mean single sequence MFE | -39.25 |
Consensus MFE | -31.02 |
Energy contribution | -31.62 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.09 |
Mean z-score | -1.98 |
Structure conservation index | 0.79 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767994 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11779109 105 - 22407834 GCAAAAAGUGGUGCCAACAAAGUUUCCAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUUGGUGGGUGGGAAGCACUCGAGUGUUGGCUGGCUAACUGG ......(((.(.((((((...((((((.(((((((((((.((((.............)))).))))))))))).))))))((....))))))))).)))...... ( -39.02) >DroSec_CAF1 37041 104 - 1 GCAAAAAGUGCUGCCAACAAAGUUUCCAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUCGGUGGGUG-GAAGCACUCGAGUGUUGGCUGGCUAACUGG ......((((((((((((...(((((((.(((((((..(.((((.............)))).)..)))))))))-)))))((....)))))))).)))..))).. ( -41.12) >DroSim_CAF1 36154 104 - 1 GCAAAAAGUGCUGCCAACAAAGUUUCCAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUCGGUGGGUG-GAAGCACUCGAGUGUUGGCUGGCUAACUGG ......((((((((((((...(((((((.(((((((..(.((((.............)))).)..)))))))))-)))))((....)))))))).)))..))).. ( -41.12) >DroEre_CAF1 47408 104 - 1 GCAAAAAGUGCUGCCAACAAAGUUUCAAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGACUUCGGGUGGGAG-GAACCACUCGAGUGUUGGCUGGCUAACUGG ......(((...(((......(((((((((((...))).)))))).))......((.((((((((((((((...-...))))))))).))))))))))..))).. ( -38.80) >DroYak_CAF1 38613 104 - 1 GCAAAAAGUGCUGCCAACAAAGUUUCAAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUGGGUGGGAG-GAACCACUCGAGUGUUGGCUGGCUAACUGG ......(((...(((......(((((((((((...))).)))))).))......((.((((((((((((((...-...))))))))).))))))))))..))).. ( -36.20) >consensus GCAAAAAGUGCUGCCAACAAAGUUUCCAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUCGGUGGGUG_GAAGCACUCGAGUGUUGGCUGGCUAACUGG ......((((((((((((...(((((...((((((((((.((((.............)))).))))))))))...)))))((....)))))))).)))..))).. (-31.02 = -31.62 + 0.60)
Location | 11,779,141 – 11,779,247 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 91.73 |
Mean single sequence MFE | -36.66 |
Consensus MFE | -31.94 |
Energy contribution | -32.18 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.11 |
Mean z-score | -1.83 |
Structure conservation index | 0.87 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11779141 106 - 22407834 CGCAUGCCCCCUGACACCAGCUGGCUAA-------AAGCAGCAAAAAGUGGUGCCAACAAAGUUUCCAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUUGGUGGGU .....((((((.((....(((((((((.-------..(((.((.....)).))).......((.((((((((...))).).)))).)).....))).)))))))).)).)))) ( -30.70) >DroSec_CAF1 37072 106 - 1 CACAUGCCCCCUGACACCAGCUGGCUAA-------AAGCAGCAAAAAGUGCUGCCAACAAAGUUUCCAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUCGGUGGGU .....((((.((((....(((((((((.-------..((((((.....)))))).......((.((((((((...))).).)))).)).....))).)))))).)))).)))) ( -37.50) >DroSim_CAF1 36185 106 - 1 CACAUGCCCCCUGACACCAGCUGGCUAA-------AAGCAGCAAAAAGUGCUGCCAACAAAGUUUCCAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUCGGUGGGU .....((((.((((....(((((((((.-------..((((((.....)))))).......((.((((((((...))).).)))).)).....))).)))))).)))).)))) ( -37.50) >DroEre_CAF1 47439 106 - 1 CGCACGCCCCCUGACACCAGUUGGCUAA-------AAGCAGCAAAAAGUGCUGCCAACAAAGUUUCAAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGACUUCGGGUGGGA ......((((((((....(((((((((.-------..((((((.....)))))).......(((((((((((...))).)))))).)).....))).))))))))))).))). ( -39.10) >DroYak_CAF1 38644 113 - 1 CGCAUGCCCUCCGACAGCAGCUGGCUAACAGCUAACAGCAGCAAAAAGUGCUGCCAACAAAGUUUCAAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUGGGUGGGA ......(((.((......(((((.....)))))....((((((.....))))))...(((((((.(((((((...))).))))(((.(.......))))))))))))).))). ( -38.50) >consensus CGCAUGCCCCCUGACACCAGCUGGCUAA_______AAGCAGCAAAAAGUGCUGCCAACAAAGUUUCCAGCCCAUCGGGACUUGGGUACAUCUCUAGACCGGCUUUCGGUGGGU ......(((.((((....(((((((((..........((((((.....))))))..............(((((........))))).......))).)))))).)))).))). (-31.94 = -32.18 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:07 2006