Locus 4087

Sequence ID 2L_DroMel_CAF1
Location 11,776,032 – 11,776,123
Length 91
Max. P 0.525256
window6441

overview

Window 1

Location 11,776,032 – 11,776,123
Length 91
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 77.55
Mean single sequence MFE -13.81
Consensus MFE -7.02
Energy contribution -7.42
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.51
SVM decision value -0.02
SVM RNA-class probability 0.525256
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11776032 91 + 22407834
G------UCCCUUAUCCCUAUUCCCUAUACCGUAU-------CCUUUAUCCUUCGUUGCAGCUGCAGCAUUC-------ACCAUCGUGGCUGCACAAUUUCCUUAACUAUG
.------............................-------............((.(((((..(.......-------......)..)))))))................ ( -12.62)
>DroSec_CAF1 33994 87 + 1
-------UCCCUUAUCCCUAUUCCCUAUACCGCAU-------CCUUUAUCCUUCGUUGCAGCUG---CAUUC-------ACCAGCGUGGCUGCACAAUUUCCUUAACUAUG
-------............................-------............((.(((((..---(....-------......)..)))))))................ ( -12.90)
>DroSim_CAF1 33095 83 + 1
-------UCCCUUAUCCCUAUUCCCUAUGCCGUAU-------CCUUUAUCCUUAGUUGCAGCUG---CAUUC-------ACCAGCGUGGCUG----GUUUCCUUAACUAUG
-------................((...((((((.-------.((........)).))).((((---.....-------..))))..))).)----).............. ( -11.30)
>DroEre_CAF1 44413 108 + 1
UUCCCUGCCCCCUGCCCCUAUCCCGUAUCCCGUAUCCUUUAUCCUUUAUCCUUCGGUGCAGCUG---CAUUCACCAUUCACCAUCGUGGCUGCACAAUUUCCUUAACUAUG
.......................................................(((((((..---(.................)..)))))))................ ( -15.83)
>DroYak_CAF1 35524 88 + 1
UUCCCUAUUCC------CCAUUUCCUAUCCCGUGU-------CCUUUAUCCUUCGGUGCAGCUG---CAUUC-------ACCAUCGUGGCUGCACAAUUUCCUUAACUAUG
...........------..................-------.............(((((((..---(....-------......)..)))))))................ ( -16.40)
>consensus
_______UCCCUUAUCCCUAUUCCCUAUACCGUAU_______CCUUUAUCCUUCGUUGCAGCUG___CAUUC_______ACCAUCGUGGCUGCACAAUUUCCUUAACUAUG
........................................................(((((((........................)))))))................. ( -7.02 =  -7.42 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:01 2006