Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,775,613 – 11,775,731 |
Length | 118 |
Max. P | 0.749534 |
Location | 11,775,613 – 11,775,731 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 92.10 |
Mean single sequence MFE | -21.90 |
Consensus MFE | -18.76 |
Energy contribution | -18.52 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.38 |
Structure conservation index | 0.86 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.749534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11775613 118 - 22407834 AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAGCGAAGCAAAGACGUGCCCCAAAAGAGGAAAUAAGUACCAAAUAGGUGCACAGAGAAAAAAAACAAGAUUCAAUGG .((.(((((..((((..((((......(((.(((........))).)))))))...))))...))))).)).....(((((.....))))).((..(((...........)))..)). ( -20.50) >DroSec_CAF1 33584 115 - 1 AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAGCGAAGCAAAGACGUUU-CCAAAAAAGGAAAUAAGUACCAAAUAGGUGCACAGAAAAAAAAAACAACAUUCAAU-- ...((((((...((((((((.....))))).)))...(((...)))...))))))((((-((......))))))..(((((.....))))).........................-- ( -23.00) >DroSim_CAF1 32683 117 - 1 AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAGCGAAGCAAAGACGUGGCCCAAAAGAGGAAAUAAGUACCAAAUAGGUGCACAGAAAA-AAAAACAACAUUCAAUGG .((.(((((..(((.(((((.....)))))...((..((...((...))...))..)))))..))))).)).....(((((.....)))))........-.................. ( -19.70) >DroEre_CAF1 43996 116 - 1 AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAACGAAGUGAAGACGUGGCCCGAAAGAGGAAAUAAGUACCAAAUAGGUGCACAGA-AA-AAAACCAACACUAAGUGC ...((((((((.((((((((.....))))).)))...(((...))).))))))))(((.(((....).))......(((((.....))))).....-..-........)))....... ( -27.00) >DroYak_CAF1 35106 117 - 1 AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAACGAAGCGAAGACGUGGCCCAAAAGAGGAAAUAAGUACCAAAUAGGUGCACGGAGAA-AAAAACAACAUUUAAUGU ...((((((...((((((((.....))))).)))...(((...)))...))))))(((..((......))......(((((.....)))))........-........)))....... ( -19.30) >consensus AUUGUCUUUAUGGCAAACUUUAAUCAAGUUCUGCAUAUCGAAGCGAAGCAAAGACGUGGCCCAAAAGAGGAAAUAAGUACCAAAUAGGUGCACAGAAAA_AAAAACAACAUUCAAUGG ...((((((...((((((((.....))))).)))...(((...)))...)))))).....((......))......(((((.....)))))........................... (-18.76 = -18.52 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:09:00 2006