Locus 4083

Sequence ID 2L_DroMel_CAF1
Location 11,773,482 – 11,773,583
Length 101
Max. P 0.691988
window6432

overview

Window 2

Location 11,773,482 – 11,773,583
Length 101
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 85.01
Mean single sequence MFE -26.07
Consensus MFE -17.92
Energy contribution -18.05
Covariance contribution 0.13
Combinations/Pair 1.09
Mean z-score -1.77
Structure conservation index 0.69
SVM decision value 0.33
SVM RNA-class probability 0.691988
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11773482 101 + 22407834
AUGCCUUAUCCAAUUCCGCAAACCAUUCCCAGUUUCAAGCGUCAAGUUUGAAGCCAACGUGAUUGUUGUGGC--UUCUAUUCUGGGUUGAUGUGGAUUUUACA
..............((((((...((..(((((.(((((((.....)))))))(((((((....)))..))))--.......))))).)).))))))....... ( -27.60)
>DroSec_CAF1 31515 89 + 1
AUGCCUUAUCCAAUUCCGCAAGCCAUUCCCAGUUUCAAGCGUCAAGUUUGAAGCCAUCGUGAUUGUUGU--------------GGGUUGAUGUGCAUUUCACA
((((..((((....(((((((..((.(((..(((((((((.....)))))))))....).)).))))))--------------)))..)))).))))...... ( -22.90)
>DroSim_CAF1 30629 103 + 1
AUGCCUUAUCCAAUUCCGCAAGCCAUUCCCAGUUUCAAGCGUCAAGUUUGAAGCCAUCGUGAUUGUUGUGGCUCUUCUAUUCUGGGUUGAUGUGGAUUUCACA
..............((((((...((..(((((.(((((((.....)))))))(((((..(....)..))))).........))))).)).))))))....... ( -27.80)
>DroYak_CAF1 33008 90 + 1
AUGCCUUAUCCAAUUCCGCAAACCAUUCCCAGUUCCAGGCAUCAAGUUUGAAGCCAUCAUGAUUGUUGUGGU--U-----UCUGGG--GAUGUGGAUUU----
..............((((((.....(((((((..((((((.(((....))).)))..((....))...))).--.-----.)))))--))))))))...---- ( -26.00)
>consensus
AUGCCUUAUCCAAUUCCGCAAACCAUUCCCAGUUUCAAGCGUCAAGUUUGAAGCCAUCGUGAUUGUUGUGGC__U_____UCUGGGUUGAUGUGGAUUUCACA
..............((((((.......(((.(((((((((.....)))))))))((.((....)).))...............)))....))))))....... (-17.92 = -18.05 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:52 2006