Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,772,358 – 11,772,454 |
Length | 96 |
Max. P | 0.917505 |
Location | 11,772,358 – 11,772,454 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 83.73 |
Mean single sequence MFE | -22.97 |
Consensus MFE | -19.14 |
Energy contribution | -20.37 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.48 |
Structure conservation index | 0.83 |
SVM decision value | 1.11 |
SVM RNA-class probability | 0.917505 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11772358 96 - 22407834 CAUUGCCAACCCGUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUUGCGUUGACAGCAGCUACAAACAUACAUU ((.(((((.....))))).))........(((((((((((.......((((.....)))).......)))...))))))))............... ( -24.44) >DroSec_CAF1 30397 96 - 1 CAUUGCCACCCCGUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGCUACAUACAUACAUU ((.((((((...)))))).))........((((((((((........((((.....))))((......))).)))))))))............... ( -24.90) >DroSim_CAF1 29506 96 - 1 CACUGCCACCCCGUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGCUAAAUACAUACAUU ((.((((((...)))))).))...(((..((((((((((........((((.....))))((......))).)))))))))..))).......... ( -25.30) >DroEre_CAF1 40884 92 - 1 CAUUGCCACCUCCUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGUUA----CAUACAUU ((.(((((.....))))).))........((((((((((........((((.....))))((......))).)))))))))...----........ ( -23.20) >DroYak_CAF1 31879 92 - 1 CGUUGCCACCUCCUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGUUC----CAUACAUU ((.(((((.....))))).))........((((((((((........((((.....))))((......))).)))))))))...----........ ( -22.50) >DroAna_CAF1 32943 76 - 1 --U----------UUUUGCUAAUUUUUGCCUGCUGUUGCAUUUUAAACAGUAUGGGCUUGGCUUUUUCGCGUUGACAGCAGUUACA--------UG --.----------..(((((.......((((((((((........))))))..))))(..((........))..).))))).....--------.. ( -17.50) >consensus CAUUGCCACCCCGUGGCACUGACUUUUUCCUGCUGUUGCAUUUUAAACAGGAUCCUCUUGGCUUUUUCGCGUUGACAGCAGCUACA__CAUACAUU ((.(((((.....))))).))........((((((((((........((((.....))))((......))).)))))))))............... (-19.14 = -20.37 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:51 2006