Locus 4080

Sequence ID 2L_DroMel_CAF1
Location 11,769,619 – 11,769,724
Length 105
Max. P 0.938155
window6428

overview

Window 8

Location 11,769,619 – 11,769,724
Length 105
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.59
Mean single sequence MFE -30.33
Consensus MFE -20.35
Energy contribution -21.35
Covariance contribution 1.00
Combinations/Pair 1.22
Mean z-score -2.73
Structure conservation index 0.67
SVM decision value 1.29
SVM RNA-class probability 0.938155
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11769619 105 - 22407834
AUUAACUCGUAGG---AGGGCUAUCUGCCAGCUACCCAAUAAACAACUGUGUCCCCAUAUCACGUGUUUACAAUCCGCACAGCUGGCAGUUGCCCUUGCCACAUCGCC
........((.((---(((((...(((((((((...............(((.........)))((((.........)))))))))))))..)))))..))))...... ( -33.80)
>DroSec_CAF1 27580 105 - 1
AUUAACUCGUAGG---AGGGCUAGCUGCCAGCUACCCAAUAAACAACUGUGCCCCCACAUCACGUGUUUACAAUCCGCACAGCUGGCAGUUCCCCUUGCCACAGCGCC
........(((((---.(((..(((((((((((..............((((....))))....((((.........)))))))))))))))))))))))......... ( -33.90)
>DroSim_CAF1 26654 105 - 1
AUUAACUCGUAGG---AGGGCUAGCUGCCAGCUACCCAAUAAACAACUGUGCCCCCACAUCACGUGUUUACAAUCCGCACAGCUGGCAGUUCCCCUUGCCACAUCGCC
........(((((---.(((..(((((((((((..............((((....))))....((((.........)))))))))))))))))))))))......... ( -33.90)
>DroEre_CAF1 38114 101 - 1
AUUAACUCGCAGG---AGGGC----UGCCUGCUACCCAAUAAACAAGUGUGCCCUCAUAUCACGUGUUUACAAUCCGCACAGCUGGCAGUUCCCCUUGCCACAUGGCC
..........(((---.((((----((((.(((.............(((...........)))((((.........))))))).)))))))).))).(((....))). ( -28.70)
>DroYak_CAF1 29020 105 - 1
AUUAACUCGUAGG---AGGGCUAGCUGCCUGCUACCUAAUAAACAAGUGUGCCCACACAUCACGUGUUUACAAUCCACACAGCUGGCAGUUCCCCUCGCCACAUCGCC
........((.((---((((..(((((((.(((.............((((....)))).....((((.........))))))).))))))).))))).).))...... ( -31.90)
>DroAna_CAF1 28974 88 - 1
AUUAACUCGAAUUCAAAUGGC---CUGCAAGUGGC------AAGAAGUCCUGGCUUGUAGCACGUGUUUACAAUACGCACAGCUGGCAUUUCCGA-----------CC
......(((..........((---(.......)))------..(((((.(..(((.((.((..((((.....)))))))))))..).))))))))-----------.. ( -19.80)
>consensus
AUUAACUCGUAGG___AGGGCUAGCUGCCAGCUACCCAAUAAACAACUGUGCCCCCACAUCACGUGUUUACAAUCCGCACAGCUGGCAGUUCCCCUUGCCACAUCGCC
...........((...((((....(((((((((..............((((....))))....((((.........)))))))))))))...))))..))........ (-20.35 = -21.35 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:49 2006