Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,231,567 – 1,231,685 |
Length | 118 |
Max. P | 0.859747 |
Location | 1,231,567 – 1,231,685 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 96.05 |
Mean single sequence MFE | -25.17 |
Consensus MFE | -21.95 |
Energy contribution | -23.45 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.20 |
Structure conservation index | 0.87 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1231567 118 + 22407834 CCAUUUGCUUUUUAUUGUUCAAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUUUUUUGCAUCUUACUCUUUUUAUCUAUCGAAAUUCGUAGGUUUUUGGUAAUAAUGAAAA .........((((((((((((((((((((.(((((((((.((((......))))))))))))).)))...............(((.((.....)))))))))))))..))))))))). ( -25.10) >DroSec_CAF1 8923 118 + 1 CCAUUUGCUUUUUAUUGUUCAAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUUUUUUGCAUCUUACUGUUUUUAUCUAUCGAAAUUCGGUGGGUUUUGGAAAUAAUGAAAA .........(((((((((((.((((((((.(((((((((.((((......))))))))))))).)))...............((((((.....))))))))))).).)))))))))). ( -27.00) >DroSim_CAF1 4704 118 + 1 CCAUUUGCUUUUUAUUGUUCAAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUUUUUUGCAUCUUACUGUUUUUAUCUAUCGAAAUUCGGUGGGUUUUGGUAAUAAUGAAAA .........(((((((((((.((((((((.(((((((((.((((......))))))))))))).)))...............((((((.....))))))))))).).)))))))))). ( -27.00) >DroYak_CAF1 4803 117 + 1 CCAUUUGCUUUUUAUUGUUCGAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUU-UUUGCAUCUUACUCUUUUUAUCUAUCGAAAUUCGCAGGGUUUUAGUAAUAAUGAAAA .........(((((((((((.((((((.((....))..((((...(((((((((((((..-...................))))))))))))).)))))))))).).)))))))))). ( -21.60) >consensus CCAUUUGCUUUUUAUUGUUCAAAAACUGUUGAAAAGUUUUGCCAUAAUUUUGGUAGAUUUUUUUGCAUCUUACUCUUUUUAUCUAUCGAAAUUCGGAGGGUUUUGGUAAUAAUGAAAA .........(((((((((((.((((((((.(((((((((.((((......))))))))))))).)))...............((((((.....))))))))))).).)))))))))). (-21.95 = -23.45 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:18 2006