Locus 4078

Sequence ID 2L_DroMel_CAF1
Location 11,762,002 – 11,762,104
Length 102
Max. P 0.953601
window6426

overview

Window 6

Location 11,762,002 – 11,762,104
Length 102
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 84.97
Mean single sequence MFE -23.78
Consensus MFE -19.74
Energy contribution -19.82
Covariance contribution 0.08
Combinations/Pair 1.08
Mean z-score -2.14
Structure conservation index 0.83
SVM decision value 1.43
SVM RNA-class probability 0.953601
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11762002 102 + 22407834
AGUUAGGGCUAAAUGGAAGCAAAGUUGCAGCAGCAUUAGCGCUGAA--------AUCCUGAAAUGCGAUAUGAUGAAAUGAGGCAGAAGCAGAGAAGUCCCUACAAAAAA
.((..(((((.................((((.((....))))))..--------.(((((...(((..(((......)))..)))....))).)))))))..))...... ( -22.40)
>DroSec_CAF1 20143 102 + 1
AGUUAGCGCUAAAUGGAAGCAAAGUUGCAGCAGCAUUAGCGCUGAA--------AUCCUGAAAUGCGAUAUGAUGAAAUGAGGCAGAAGCAGAGAAGACCCUACGAAAAA
..((((((((((.((....))....(((....))))))))))))).--------.(((((...(((..(((......)))..)))....))).))............... ( -23.40)
>DroEre_CAF1 27589 88 + 1
AGUUAGCGCUAAAUGGAAGCAAAGUUGCAGCAGCAUUAGCGCUGAA--------AUCCUGAAAUGCGAUAUGAUGAAAUGAGGCAGAAGCAGAGA-------A-------
..((((((((((.((....))....(((....))))))))))))).--------.(((((...(((..(((......)))..)))....))).))-------.------- ( -23.40)
>DroYak_CAF1 21333 95 + 1
AGUUAGCGCUAAAUGGAAGCAAAGUUGCAGCAGCAUUAGCGCUGAA--------AUCCUGAAAUGCGAUAUGAUGAAAUGAGGCAGAAGCAGAGAGGACCCUA-------
..((((((((((.((....))....(((....))))))))))))).--------.(((((...(((..(((......)))..)))....))).))........------- ( -23.40)
>DroAna_CAF1 22105 104 + 1
AGUUAGCGCUAAAUGGAAGCAAAGUUGCAGCAGCAUUAGUGCUGAAAUGUUGAAAUGCUGAAAUGCGAUAUGAUGAAAUGAGGCAGAAGCGAAGCAGCG------GCAGU
..((((((((((.((....))....(((....)))))))))))))..(((((...((((....(((..(((......)))..)))..))))...)))))------..... ( -26.30)
>consensus
AGUUAGCGCUAAAUGGAAGCAAAGUUGCAGCAGCAUUAGCGCUGAA________AUCCUGAAAUGCGAUAUGAUGAAAUGAGGCAGAAGCAGAGAAGACCCUA____A__
..((((((((((.((....))....(((....)))))))))))))............(((...(((..(((......)))..)))....))).................. (-19.74 = -19.82 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:46 2006