Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,759,769 – 11,759,873 |
Length | 104 |
Max. P | 0.723566 |
Location | 11,759,769 – 11,759,873 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 74.97 |
Mean single sequence MFE | -33.57 |
Consensus MFE | -22.94 |
Energy contribution | -23.25 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.36 |
Mean z-score | -1.15 |
Structure conservation index | 0.68 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.723566 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11759769 104 - 22407834 -UCCUGCG-------UCCUGUGUCCUUCGUCCUGCAUCCU---UCGUCCUGCAUCCAUGCUGCUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAACAUUUU--C -.......-------(((...((..((((((((((((...---.......((((.((((((.(((......))).)))))).)))))))).))))))))..)).))).......--. ( -34.90) >DroSec_CAF1 18031 105 - 1 AUCCUGCC-------UCCUGUGUCCUUCGUCCUGCAUCCU---UCGUCCUGCAACCAUGCUUCUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAACAUUUU--C ........-------(((...((..((((((((((((...---.......(((..((((((((((......))))))))))..))))))).))))))))..)).))).......--. ( -37.30) >DroSim_CAF1 17125 108 - 1 AUCCUGCC-------UCCUGUGUCCUUCGUCCUGCAUCUUGCAUCGUCCUGCGUCCAUGCUGCUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAACAUUUU--C ........-------(((...((..((((((((((((...(((.(((..(((.(((..((.((....)).))))).))).)))))))))).))))))))..)).))).......--. ( -36.70) >DroEre_CAF1 25364 91 - 1 AUCCU---------------------UCGUCCUUCGUCCU---UCGUCCUGCAUCCGUGCUGGUGGUCCUGCGGAGGCAUGCGUGCGUGCAAGGACGAAAAACUGGAACAUUUU--C .(((.---------------------..((..((((((((---(.(..(.((((.((((((..((......))..)))))).)))))..))))))))))..)).))).......--. ( -32.30) >DroWil_CAF1 22530 96 - 1 ----------------CUUGUGUUUAUUGUCCUUAUUUCA---GGUUAUU--GUUGUUGUUGUUGGUGAGUUGAAUGCGUGCGUGCAUGCAAGGACAACAAACUGGAACAUUUCUGU ----------------.....((((.((((((((..((((---(.(((((--(..........)))))).))))).(((((....))))))))))))).)))).............. ( -25.30) >DroYak_CAF1 19078 112 - 1 AUCCUGCGUUCUGUGUCCUGUGUCCCUCGUCCUUCGUCCU---UCGUCCUGCAUCCAUGCUGGUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAGCAUUUU--C ...................(((..((..((..((((((((---(..(((.(((.((((....)))))))...))).(((((....))))))))))))))..)).))..)))...--. ( -34.90) >consensus AUCCUGC________UCCUGUGUCCUUCGUCCUGCAUCCU___UCGUCCUGCAUCCAUGCUGCUGGUGCUGCGGAAGCAUGCGUGCGUGCAAGGACGGAAAACUGGAACAUUUU__C ...............(((.((.....(((((((...............(((((.(((......)))...)))))..(((((....))))).)))))))...)).))).......... (-22.94 = -23.25 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:46 2006