| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,758,345 – 11,758,459 |
| Length | 114 |
| Max. P | 0.936884 |
| Location | 11,758,345 – 11,758,459 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.51 |
| Mean single sequence MFE | -22.26 |
| Consensus MFE | -16.20 |
| Energy contribution | -16.87 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.936884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11758345 114 + 22407834 CAACUUUCACAUCACUAAACCACUGAAAGUUGUUGACUUUAUGCAACUUUUUCGUGGCCACCGUCAAC---UACGUGAGGGU-CUUUGCCAACACUUCAGACCACCACCCUCUAACAC-- .((((((((..............))))))))((((((.....((.((......)).))....))))))---...(((..(((-((..(......)...)))))..)))..........-- ( -23.74) >DroGri_CAF1 19167 104 + 1 CAACUUUCACAUCACUAAACCACUGAAAGUUGUUGACUUUAUGCAACUUUUUCGUGGCCACAGACAAC---UACGUGAG---------CCAGCACUAAGGA----CACACACAAUUCUCC (((((((((..............)))))))))....((((((((.((......))((((((.......---...))).)---------)).))).))))).----............... ( -20.04) >DroEre_CAF1 24054 110 + 1 CAACUUUCACAUCACUAAACCACUGAAAGUUGUUGACUUUAUGCAACUUUUUCGUGGCCACCGUCAAC---UACGUGAGGGU-CUUUGCCAACACUUCAG----CCACCCUCAAUCAU-- .((((((((..............))))))))((((((.....((.((......)).))....))))))---....(((((((-..(((.........)))----..))))))).....-- ( -24.14) >DroWil_CAF1 21321 108 + 1 CAACUUUCACAUCACUAAACCACUGAAAGUUGUUGACUUUAUGCAACUUUUUCGUGGCCACAGACAACUGCUACGUGAGUGGACCAU----GGACC--------CCACCUACAAAUCUCU .....(((((.((((....((((.(((((((((.........)))))))))..))))...(((....)))....)))))))))....----((...--------...))........... ( -23.30) >DroYak_CAF1 17668 111 + 1 CAACUUUCACAUCACUAAACCACUGAAAGUUUUUGACUUUAUGCAACUUUUUCGUGGCCACCGUCAAC---UACGUGAGGGU-CUUUGCCAACACUUCAGA---CCACCCUCGAACAC-- .((((((((..............)))))))).(((((.....((.((......)).))....))))).---....(((((((-.((((.........))))---..))))))).....-- ( -19.44) >DroAna_CAF1 18832 99 + 1 CAACUUUCACAUCACUAAACCACUGAAAGUUGUUGACUUUAUGCAACUUUUUCGUGGCCACAGACAAC---UACGUGAGGGU-CUCUAUAAGGACUUCACACC----------------- ...................((((.(((((((((.........)))))))))..))))...........---...((((((..-((.....))..))))))...----------------- ( -22.90) >consensus CAACUUUCACAUCACUAAACCACUGAAAGUUGUUGACUUUAUGCAACUUUUUCGUGGCCACAGACAAC___UACGUGAGGGU_CUUUGCCAACACUUCAGA___CCACCCUCAAACAU__ ...(((((((.........((((.(((((((((.........)))))))))..)))).....(..........))))))))....................................... (-16.20 = -16.87 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:44 2006