Locus 4074

Sequence ID 2L_DroMel_CAF1
Location 11,757,063 – 11,757,172
Length 109
Max. P 0.934406
window6421

overview

Window 1

Location 11,757,063 – 11,757,172
Length 109
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.69
Mean single sequence MFE -28.83
Consensus MFE -14.31
Energy contribution -15.67
Covariance contribution 1.36
Combinations/Pair 1.14
Mean z-score -2.26
Structure conservation index 0.50
SVM decision value 1.24
SVM RNA-class probability 0.934406
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11757063 109 - 22407834
AGCUUCAGCAGCAGAACGCUGUCUAAUUUAGUUGUUACCCGAUGGGGA---CUUCAC-------CCAUCCU-CAGAAACAAUUAAACCUGGAAAGCUUCGUCCACGUUGGGAAAUUUUGC
.((....)).((((((.(((.((((.((((((((((.(..((((((..---.....)-------)))))..-..).))))))))))..)))).)))....(((......)))..)))))) ( -31.20)
>DroSec_CAF1 15227 111 - 1
AGCUUCACCAGCAGAACGCUGUCUAAUUUAGUUGUUACCCGAUGGGGA---CUUCACCCUAAACCCAUCCU-CAAAAACAAUUAAACCUGGAAAGCUUCGUCCACGUUAGGAAAU-----
.(((.....))).(((.(((.((((.((((((((((....((((((..---............))))))..-....))))))))))..)))).)))))).(((......)))...----- ( -28.54)
>DroEre_CAF1 22672 116 - 1
AGCUUCACCAGCAGACCGCUGUCUAAUUUAGUUGUUACCCGAUGGGGA---CUUAACACAAAACCCAUCCU-CAAAAACAAUUAAACCUGGAAAGCUUCGUCCGCGUUACGAAAUUUCGC
.((((..((((.((((....))))..((((((((((....((((((..---............))))))..-....)))))))))).)))).))))(((((.......)))))....... ( -28.34)
>DroYak_CAF1 16219 116 - 1
AGCUUCACCCGCAGAACGCAGUCCAAUUUAGUUGUUACCCGUUGGGGA---CUUAGCCCAAAACCCAUCCU-CAAAAACAAUUAAACCUGGAAAGCUUCGUCCACGUUACGAAAUUUUGC
..........((((((.((..((((.((((((((((.....(((((((---................))))-))).))))))))))..))))..))(((((.......))))).)))))) ( -27.69)
>DroAna_CAF1 17616 114 - 1
ACUUUCAGUUGCAGGCUGUCGUCUAAUUUAGAUGAUACCCGAUAGGAAAAACUAAGUG--GACGCCACCCACUAAAAACAAUUAAAAAUGGAAAGCUCUGGCUUGCCUAGGAAAAU----
..((((....(((((((((((((((...))))))))..(((.(((......)))((((--(.......)))))...............)))........)))))))....))))..---- ( -28.40)
>consensus
AGCUUCACCAGCAGAACGCUGUCUAAUUUAGUUGUUACCCGAUGGGGA___CUUAACCC_AAACCCAUCCU_CAAAAACAAUUAAACCUGGAAAGCUUCGUCCACGUUAGGAAAUUU_GC
(((((...((((.....))))((((.((((((((((....((((((.................)))))).......))))))))))..)))))))))....................... (-14.31 = -15.67 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:42 2006