Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,753,704 – 11,753,824 |
Length | 120 |
Max. P | 0.662097 |
Location | 11,753,704 – 11,753,824 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -32.96 |
Consensus MFE | -26.60 |
Energy contribution | -27.52 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.08 |
Mean z-score | -1.53 |
Structure conservation index | 0.81 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662097 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11753704 120 - 22407834 ACGAGCGUACUCGUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCUACAGGCCCAAUAAGUAAAUCAGAACUAGCA (((((....)))))...(((((....((((.........(((((((.(((((((((((((....)))))).))))))).)).)))))((.....))...............))))))))) ( -33.90) >DroSec_CAF1 11953 120 - 1 ACGAGCGUACUCGUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCCACAGGCCCAUUAAAUAAAUCCGAACUAGCA (((((....)))))...(((((((((((((....)))))(((((((.(((((((((((((....)))))).))))))).)).)))))(((...)))..............)))..))))) ( -35.60) >DroSim_CAF1 10854 120 - 1 ACGAGCGUACUCGUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCCACAGGCCCAUUAAAUAAAUCAGAACUAGCA (((((....)))))...(((((....((((.........(((((((.(((((((((((((....)))))).))))))).)).)))))(((...)))...............))))))))) ( -35.30) >DroEre_CAF1 19341 120 - 1 ACGAGCGUACUCAUAAAUGUUAUCGUGUCCAAAAGAAUAAGGAGCCAUGUGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCUUGAAGAACACUGGAUAAAUCAGAAUGAGCA .........(((((.....((((((((((...(((....(((((((.((..(((((((((....)))))).)))..)).)).))))).)))...).))))..)))))......))))).. ( -32.20) >DroYak_CAF1 12585 108 - 1 ACGAGCGUACUCAUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGUUUCUUCGAUGGCGAAAAGGGAUGCAAGGACUUCUGC------------GGAUAAAUCAGAAUGAGCA ....(((((..(.....(((((((((((((....)))))(((((((....))))))).)))))))).....)..)))......(((((.------------........)))))...)). ( -27.80) >consensus ACGAGCGUACUCGUAAAUGCUAUCGUGUUCAACAGAAUAAGGAGCCAUGCGGCUUUUUCGAUGGCGAAAAGGGUUGCAAGGACUUCUGCCACAGGCCCAUUAAAUAAAUCAGAACUAGCA (((((....)))))...(((((((.(((((....)))))(((((((.(((((((((((((....)))))).))))))).)).)))))........................))..))))) (-26.60 = -27.52 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:37 2006