Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,753,257 – 11,753,377 |
Length | 120 |
Max. P | 0.919059 |
Location | 11,753,257 – 11,753,377 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.25 |
Mean single sequence MFE | -38.48 |
Consensus MFE | -26.98 |
Energy contribution | -28.98 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.14 |
Mean z-score | -2.69 |
Structure conservation index | 0.70 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919059 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11753257 120 - 22407834 AAAUGGCGUGCGUGGAGAAAAAUACUUGGGUAUUCGAUAGAAAUGCCCAAACUUGUAUUUCUGUCAUUCCUGACAAGGAACCCUGCGGGCACUUUGUUAGCGAAAAGGCUUGCAAGGAUC .....((.((((((........)))..((((....(((((((((((........)))))))))))..((((....)))))))).))).)).((((((.(((......))).))))))... ( -40.70) >DroSec_CAF1 11511 120 - 1 AAAUAGCUUGCGUGGAGAAAAAUACUUGGGUAUUCGACAGAAAUUCUCAAACUUGUAUUUCUGUCAUUCCUGACCAGGAACCAUGCGGGCACUUUGUUAGCGAAAAGGCUUGCAAGGAUC .....((((((((((.....(((((....))))).(((((((((.(........).))))))))).(((((....))))))))))))))).((((((.(((......))).))))))... ( -44.90) >DroSim_CAF1 10422 120 - 1 AAAUCGCUUGCGUGGAGAAAAAUACUUGGGUAUUCGACAGAAAUUCUCAAACUUGUAUUUCUGUCAUUCCUGACCAGGAACCCUGCGGGCACUUUGUUAGCGAAAAGGCUUGCAAGGAUC .....(((((((((........)))..((((....(((((((((.(........).)))))))))..((((....)))))))).)))))).((((((.(((......))).))))))... ( -40.90) >DroEre_CAF1 18894 120 - 1 AAAACCAUUGCGUCGAGGAAAAUACUUGGGUAUUCGACAUAAAUUCUCAAACUUGCGAUCCCGUGAUUCCUAACAAGGAACCCUGCGGGCUCUUUAUUAGCGAAAAGGCUUGCAAGGAGG ....((.....(((((.....((((....))))))))).............(((((((.((((((.(((((....)))))...)))))).))......(((......))).)))))..)) ( -30.70) >DroYak_CAF1 12141 120 - 1 AAAACCCCUGCGUCGAGAAAAACACUUGGGUAUUCGAUCAGAAUGCUCGAACUUGUAAUCCUGUGACUCCUGACAAGGAACCCUGCGGGCACUUUAUUAGCGAAAAGGCUUGUAAGGAGG ....(((((((((((((....(((.((((((((((.....))))))))))...)))....)).))))((((....)))).....)))))..((((((.(((......))).)))))).)) ( -35.20) >consensus AAAUCGCUUGCGUGGAGAAAAAUACUUGGGUAUUCGACAGAAAUUCUCAAACUUGUAUUUCUGUCAUUCCUGACAAGGAACCCUGCGGGCACUUUGUUAGCGAAAAGGCUUGCAAGGAUC .....((((((...(((.......)))((((....(((((((((.(........).)))))))))..((((....)))))))).)))))).((((((.(((......))).))))))... (-26.98 = -28.98 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:36 2006