Locus 4065

Sequence ID 2L_DroMel_CAF1
Location 11,749,267 – 11,749,358
Length 91
Max. P 0.645872
window6405

overview

Window 5

Location 11,749,267 – 11,749,358
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 92.60
Mean single sequence MFE -21.93
Consensus MFE -17.90
Energy contribution -18.38
Covariance contribution 0.48
Combinations/Pair 1.08
Mean z-score -1.43
Structure conservation index 0.82
SVM decision value 0.23
SVM RNA-class probability 0.645872
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11749267 91 + 22407834
CCACAAAAUUGUGGUUUAAAAUAAUUUUUUGGUUCCCUUUUUUUAGUUGUCUGAGAAAUGCAAUGGCUGGUAGCCAAAAUGUGGGAGUCUG
(((((....)))))................(..((((.((((((((....)))))))).(((.((((.....))))...)))))))..).. ( -24.00)
>DroSec_CAF1 7580 91 + 1
CCACAAAAUUGUGGUUUAAAAUAAUUUUUUGGUUUCCUUUUUUUAGUUGUCUGAGAAAUGCAAUGGCUGGCAGCCAAAAAGUGGGAGUCCG
(((((....))))).........(((((((((((.((.((((((((....)))))))).((....)).)).)))))))))))((....)). ( -23.70)
>DroSim_CAF1 6430 90 + 1
CCACAAAAUUGUGGUUUAAAAUAAUUUUUUGGUUCCCU-UUUUUAGUUGUCUGAGAAAUGCAAUGGCUGGCAGCCAAAAAGUGGGAGUCCG
(((((....)))))................((((((((-(((((((....)))))))).....((((.....))))......))))).)). ( -24.60)
>DroEre_CAF1 14637 89 + 1
CCACAAAAUUGUGGUAUAAAAUAAUUUUUUGGUUCUCU--UUUUAGUUUUCGGAGAAAUGCAAUGGCUGGCAGCCAAAAAGUGGGAGUGCG
(((((....))))).........(((((((((((((((--...........)))))..(((........)))))))))))))......... ( -19.20)
>DroYak_CAF1 7820 87 + 1
C--CAAAAUUGCGGUAUAAAAUAAUUUUUUGGUUCCCU--UUUUAGUUUUCUGAGAAAUGCAAUGGCUGGCAGCCAAAAAGUGGGAGUUCG
(--(((((..................))))))((((((--((((((....)))))))......((((.....))))......))))).... ( -18.17)
>consensus
CCACAAAAUUGUGGUUUAAAAUAAUUUUUUGGUUCCCU_UUUUUAGUUGUCUGAGAAAUGCAAUGGCUGGCAGCCAAAAAGUGGGAGUCCG
(((.((((((((........)))))))).)))(((((...((((((....)))))).......((((.....))))......))))).... (-17.90 = -18.38 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:26 2006