Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,748,777 – 11,748,871 |
Length | 94 |
Max. P | 0.873562 |
Location | 11,748,777 – 11,748,871 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 86.37 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -19.06 |
Energy contribution | -19.14 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.96 |
Structure conservation index | 0.79 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11748777 94 - 22407834 UGAGUGCAAGAACGCUUAAUAGUUUUAUUGCCUGGCCACAAGCGUUCUUGAUACUCAGCAAUCAACGACUUACAUAGACUAGACGAAUG-------GAUGU (((((((((((((((((....(((.........)))...))))))))))).))))))(((.(((.((.((..........)).))..))-------).))) ( -23.30) >DroSec_CAF1 7084 93 - 1 UGAGUGCAAGAACGUUUAAUAGUUUUAUUGC-UUGCCACAAGCGUUCUUGAUACUCAGUAAUCAACGACUUACAUAGACUAGACGAAUG-------GAAGU (((((((((((((((((...(((......))-)......))))))))))).))))))((((........)))).....(((......))-------).... ( -22.60) >DroSim_CAF1 5935 93 - 1 UGAGUGCAAGAACGUUUAAUAGUUUUAUUGC-UGGCCACAAGCGUUCUUGAUACUCAGUAAUCAACGACUUACAUAGACUAGACGAAUG-------GAAGU (((((((((((((((((..((((......))-)).....))))))))))).))))))((((........)))).....(((......))-------).... ( -24.20) >DroEre_CAF1 14198 100 - 1 UGAGUGCACGAACGUUUAAUAGUUUUAUUGC-UGGCCACAAGCGUUUUUGAUACUCAGUAAUCAAGGUCUUACAUAGAAUAUGUGAUUGCCUAUAGAAAGC ((((((((.((((((((..((((......))-)).....)))))))).)).))))))(((((((...(((.....))).....)))))))........... ( -25.20) >DroYak_CAF1 7297 100 - 1 UGAGUGCAAGAACGUUUAAUAGUUUUAUUGC-UGGCCACAAGCGUUCUUGAUACUCACUAAUUAAGGUUUUACAUAGAAUAGACGAUAGUUUAUAGAAAGU (((((((((((((((((..((((......))-)).....))))))))))).)))))).....................((((((....))))))....... ( -26.10) >consensus UGAGUGCAAGAACGUUUAAUAGUUUUAUUGC_UGGCCACAAGCGUUCUUGAUACUCAGUAAUCAACGACUUACAUAGACUAGACGAAUG_______GAAGU (((((((((((((((((....(((.........)))...))))))))))).))))))............................................ (-19.06 = -19.14 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:25 2006