Locus 4062

Sequence ID 2L_DroMel_CAF1
Location 11,747,900 – 11,748,020
Length 120
Max. P 0.938553
window6402

overview

Window 2

Location 11,747,900 – 11,748,020
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.96
Mean single sequence MFE -28.65
Consensus MFE -26.34
Energy contribution -26.53
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.47
Structure conservation index 0.92
SVM decision value 1.27
SVM RNA-class probability 0.938553
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11747900 120 - 22407834
UAUGGUUUGACAAAGGACAGGCCACCGCACAGAGAUGACCGACUUCAUCAUGAACAAAGCUGGCGCCUCGGGCGCAAAUUUCAAUGCGUUUCGAGCAUAAAAUAAAUGUCCACUAAAAAU
..............(((((.((((.(...((..(((((......))))).))......).))))((.(((((((((........)))).)))))))..........)))))......... ( -29.40)
>DroSec_CAF1 6267 120 - 1
UGUGGUUUCACAAAGGACAGGCCACCGCACAGAGAUGACCGACUUCAUCAUCAACAAAGCUGGCGCCUCGGGCGCAAAUUUCAAUGCAUUUCGAGCAUAAAAUAAAUGUCCACUAAAAAU
((((....))))..(((((.((((.(.....(((((((......))))).))......).))))((.(((((.(((........)))..)))))))..........)))))......... ( -28.80)
>DroSim_CAF1 5117 120 - 1
UAUGGUUUGACAAAGGACAGGCCACCGCACAGAGAUGACCGACUUCAUCAUCAACAAAGCUGGCGCCUCGGGCGCAAAUUUCAAUGCGUUUCGAGCAUAAAAUAAAUGUCCACUAAAAAU
..............(((((.((((.(.....(((((((......))))).))......).))))((.(((((((((........)))).)))))))..........)))))......... ( -30.60)
>DroEre_CAF1 13330 116 - 1
----GUUUCACAAAGGACAGGCCACCGCACAGAGAUGACCGACUUCAUCAUCCACAAAGCUGGCGCCUUGGGCGCAAAUUUCAAUGCGUUUCAAGCAUAAAAUAAAUGUCCACUAAAAAU
----..........(((((.((((.(.....(((((((......))))).))......).))))((.(((((((((........)))).)))))))..........)))))......... ( -28.80)
>DroYak_CAF1 6413 116 - 1
----GUUUGACAAAGGACAGGCCACCGCACAGAGAUGACCGACUUCAUCAUCAACAAAGCUGGCGCCUCGGGCGCAAAUUUCAAUGCGUUUCAAGCAUAAAAUAAAUGUCCACUAAAAAU
----..........(((((.((((.(.....(((((((......))))).))......).))))((.(..((((((........))))))..).))..........)))))......... ( -27.70)
>DroAna_CAF1 7911 116 - 1
----GGCUGACAAAAGACAGGCCACCGCACUGAGAUGACCGACUUCAUCGUCAACAAAGCUGGCGCCUUGGGCGCAAAUUUCAAUGCGUUUUAAGCAUAAAAUAAAUGUCCACUAAAAAU
----(((((((......(((((....)).))).(((((......))))))))).((....))..))).((((((...((((..((((.......)))).))))...))))))........ ( -26.60)
>consensus
____GUUUGACAAAGGACAGGCCACCGCACAGAGAUGACCGACUUCAUCAUCAACAAAGCUGGCGCCUCGGGCGCAAAUUUCAAUGCGUUUCAAGCAUAAAAUAAAUGUCCACUAAAAAU
..............(((((.((((.(.....(((((((......))))).))......).))))((.(((((((((........)))).)))))))..........)))))......... (-26.34 = -26.53 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:23 2006