Locus 406

Sequence ID 2L_DroMel_CAF1
Location 1,230,662 – 1,230,779
Length 117
Max. P 0.867467
window647

overview

Window 7

Location 1,230,662 – 1,230,779
Length 117
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.66
Mean single sequence MFE -28.81
Consensus MFE -27.08
Energy contribution -27.45
Covariance contribution 0.37
Combinations/Pair 1.06
Mean z-score -1.75
Structure conservation index 0.94
SVM decision value 0.86
SVM RNA-class probability 0.867467
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1230662 117 + 22407834
CAGCUGUUCAAUGGGCCAGUACCUCGUCUAGCCCC---UCGGAACACUACCCCUCAAAAUACUCACCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGAAC
.((.(((((...((((.((........)).)))).---...))))))).....(((((........(((((((....((((...........))).)....))))))).....))))).. ( -20.22)
>DroSec_CAF1 8016 117 + 1
CAGCUGUUCAAUGGGCCAGUACCUCGGCUGGCCCC---UCGGAACACUCCCCCUCAAAGUACUCACCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGGAC
.((.(((((...((((((((......)))))))).---...))))))).....(((((((......(((((((....((((...........))).)....)))))))...))))))).. ( -31.70)
>DroSim_CAF1 3812 117 + 1
CAGCUGUUCAAUGGGCCAGUACCUCGGCUGGCCCC---UCGGAACACUCCCCCUCAAAGUACUCGCCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGAAC
.((.(((((...((((((((......)))))))).---...))))))).....(((((((......(((((((....((((...........))).)....)))))))...))))))).. ( -32.60)
>DroYak_CAF1 3878 120 + 1
CAGCUGUUCAAUGGGCCAGUGCCUCGGCUGGCCCCCCUUUGGAGCACUCCCCCUCAAAGUACUCUCCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGAAC
..(((..((((.((((((((......))))))))....)))))))........(((((((......(((((((....((((...........))).)....)))))))...))))))).. ( -30.70)
>consensus
CAGCUGUUCAAUGGGCCAGUACCUCGGCUGGCCCC___UCGGAACACUCCCCCUCAAAGUACUCACCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGAAC
.((.(((((...((((((((......)))))))).......))))))).....(((((((......(((((((....((((...........))).)....)))))))...))))))).. (-27.08 = -27.45 +   0.37) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:13 2006