Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,230,662 – 1,230,779 |
Length | 117 |
Max. P | 0.867467 |
Location | 1,230,662 – 1,230,779 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.66 |
Mean single sequence MFE | -28.81 |
Consensus MFE | -27.08 |
Energy contribution | -27.45 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -1.75 |
Structure conservation index | 0.94 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.867467 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1230662 117 + 22407834 CAGCUGUUCAAUGGGCCAGUACCUCGUCUAGCCCC---UCGGAACACUACCCCUCAAAAUACUCACCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGAAC .((.(((((...((((.((........)).)))).---...))))))).....(((((........(((((((....((((...........))).)....))))))).....))))).. ( -20.22) >DroSec_CAF1 8016 117 + 1 CAGCUGUUCAAUGGGCCAGUACCUCGGCUGGCCCC---UCGGAACACUCCCCCUCAAAGUACUCACCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGGAC .((.(((((...((((((((......)))))))).---...))))))).....(((((((......(((((((....((((...........))).)....)))))))...))))))).. ( -31.70) >DroSim_CAF1 3812 117 + 1 CAGCUGUUCAAUGGGCCAGUACCUCGGCUGGCCCC---UCGGAACACUCCCCCUCAAAGUACUCGCCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGAAC .((.(((((...((((((((......)))))))).---...))))))).....(((((((......(((((((....((((...........))).)....)))))))...))))))).. ( -32.60) >DroYak_CAF1 3878 120 + 1 CAGCUGUUCAAUGGGCCAGUGCCUCGGCUGGCCCCCCUUUGGAGCACUCCCCCUCAAAGUACUCUCCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGAAC ..(((..((((.((((((((......))))))))....)))))))........(((((((......(((((((....((((...........))).)....)))))))...))))))).. ( -30.70) >consensus CAGCUGUUCAAUGGGCCAGUACCUCGGCUGGCCCC___UCGGAACACUCCCCCUCAAAGUACUCACCAUUUUGCCACCCGCUCUCUAGUUCUGCGUGAUAAUAAAAUGAAAACUUUGAAC .((.(((((...((((((((......)))))))).......))))))).....(((((((......(((((((....((((...........))).)....)))))))...))))))).. (-27.08 = -27.45 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:13 2006