Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,740,985 – 11,741,091 |
Length | 106 |
Max. P | 0.783082 |
Location | 11,740,985 – 11,741,091 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 85.92 |
Mean single sequence MFE | -29.61 |
Consensus MFE | -22.24 |
Energy contribution | -22.80 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.05 |
Mean z-score | -1.83 |
Structure conservation index | 0.75 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11740985 106 - 22407834 GUAUCUUUUAUAGCAUUUUUUGCCACACUUUGCUAAUCAGUUU-GGAUAAUGAGCUGUUUAGCAGGGCUUUAAUGGGUCCGCCGCCUGACAGGUGGACUCAAAUUUG ............(((.....)))....(((((((((.((((((-(.....))))))).)))))))))......((((((((((........))))))))))...... ( -36.50) >DroSec_CAF1 199947 106 - 1 GUAUAUUUUCUACCACUGCAUGCCACAUUUUACUAAUCAGUUU-GGAUAAUUAGCUGUUUUCAAGGGCUUUAAUGGGUCCGCCGCCUGACAGGUGGACUCAAAUUUG .....................(((.............(((((.-........)))))........))).....((((((((((........))))))))))...... ( -23.60) >DroSim_CAF1 200558 106 - 1 GUAUCUUUUCUGCCACUGCAUGCCACACUUUACUAAUCAGUUU-GGAUAAUUAGCUGUUUUCCAGGGCUUUAAUGGGUCCGCCGCCUGACAGGUGGACUCAAAUUUG ...........(((((((.((..............))))))((-(((.(((.....))).)))))))).....((((((((((........))))))))))...... ( -28.44) >DroYak_CAF1 194234 107 - 1 UAAUUUUUUACAGUGCUGCAUGCCACACAUUACUAAUCAGUUUCGGUUAAUGAACUGUUUUGCCGAGCUUUAAUGGGUCCGCCUGCUGACAGGUGGACUCAAAUAUG ............((((.....).)))............((((.((((.((........)).))))))))....((((((((((((....))))))))))))...... ( -29.90) >consensus GUAUCUUUUAUACCACUGCAUGCCACACUUUACUAAUCAGUUU_GGAUAAUGAGCUGUUUUCCAGGGCUUUAAUGGGUCCGCCGCCUGACAGGUGGACUCAAAUUUG .....................(((.............((((((........))))))........))).....((((((((((........))))))))))...... (-22.24 = -22.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:18 2006