Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,739,156 – 11,739,279 |
Length | 123 |
Max. P | 0.865096 |
Location | 11,739,156 – 11,739,250 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 75.32 |
Mean single sequence MFE | -22.00 |
Consensus MFE | -12.02 |
Energy contribution | -14.02 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.93 |
Structure conservation index | 0.55 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11739156 94 + 22407834 CCUCAUUACUCAUACGCCACGUUGGCAAACAUGCUGCUAAUGCGCGUGUUAGCCAUACUCC-UCGGCCAUUUCUUGGCAC--ACACUUAUUAUUAUC ..............((....((((((.(((((((.((....))))))))).)))).))...-.))((((.....))))..--............... ( -24.70) >DroSec_CAF1 198119 96 + 1 UCACGUUACUCAUACGCCACGUUGGCAAGCAUGCCGCUAAUGCGCGUGUUAGCCACACUCC-UCGGCCAUUUCUUUGCACAGACACUUAUUGUUAUC ....((.........(((..((((((.(((((((.((....))))))))).)))).))...-..))).........))...((((.....))))... ( -21.87) >DroSim_CAF1 198733 94 + 1 UCACGUUACUCAUACGCCACGUUGGCAAACAUGCUGCUAAUGCGCGUGUUAGCCACACUCC-UCGGCCAUUUCUUGGCAC--ACACUUAUUGUUAUC ...(((.......)))....((((((.(((((((.((....))))))))).)))).))...-...((((.....))))..--............... ( -24.70) >DroWil_CAF1 120971 81 + 1 UUAGAUGAAUCAUACGCCACGUAGACCAUU----UGUUAAUCUGAAUUU----C-UAUUCGUUCGGC---UUAGUCGCAU---UAUCUAUAAUUAU- .(((((((....((((...))))(((....----...(((.((((((..----.-.....)))))).---))))))...)---)))))).......- ( -11.51) >DroYak_CAF1 192415 94 + 1 CUGCGUUACUCAUACGCCACGUUGGCAAUCAUGCUGCUAAUGCGCGUGUUAGCCGUAUUCC-UUGGCUAUUUGUUGGCAC--ACACUUAAUGCUAUC ..((((((...((((((..((((((((.......)))))))).))))))((((((......-.))))))...........--.....)))))).... ( -27.20) >consensus UCACGUUACUCAUACGCCACGUUGGCAAACAUGCUGCUAAUGCGCGUGUUAGCCAUACUCC_UCGGCCAUUUCUUGGCAC__ACACUUAUUGUUAUC ........((.((((((..((((((((.......)))))))).)))))).)).............((((.....))))................... (-12.02 = -14.02 + 2.00)
Location | 11,739,179 – 11,739,279 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 75.99 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -13.38 |
Energy contribution | -16.82 |
Covariance contribution | 3.44 |
Combinations/Pair | 1.21 |
Mean z-score | -1.97 |
Structure conservation index | 0.52 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.849710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11739179 100 + 22407834 GGCAAACAUGCUGCUAAUGCGCGUGUUAGCCAUACUCC-UCGGCCAUUUCUUGGCAC--ACACUUAUUAUUAUCAGUUCCCUUAGGGUUAAUAAUAUGAGGUU (((.(((((((.((....))))))))).))).....((-(((((((.....))))..--.....((((((((......(((...))).))))))))))))).. ( -34.10) >DroSec_CAF1 198142 102 + 1 GGCAAGCAUGCCGCUAAUGCGCGUGUUAGCCACACUCC-UCGGCCAUUUCUUUGCACAGACACUUAUUGUUAUCAGUUCCCUUAGGGUUAAUAAUAUUAGGUU (((.(((((((.((....))))))))).))).......-......................(((((.((((((.....(((...)))...)))))).))))). ( -25.30) >DroSim_CAF1 198756 100 + 1 GGCAAACAUGCUGCUAAUGCGCGUGUUAGCCACACUCC-UCGGCCAUUUCUUGGCAC--ACACUUAUUGUUAUCAGUUCCCUUAGGGUUAAUAAUAUUAGGUU (((.(((((((.((....))))))))).))).......-...((((.....))))..--..(((((.((((((.....(((...)))...)))))).))))). ( -31.30) >DroWil_CAF1 120994 87 + 1 GACCAUU----UGUUAAUCUGAAUUU----C-UAUUCGUUCGGC---UUAGUCGCAU---UAUCUAUAAUUAU-AAUCACCUACGGGUUAACAUAAUAAGGUU ((((...----.(((((.((((((..----.-.....)))))).---)))).)....---........(((((-....(((....)))....)))))..)))) ( -13.80) >DroYak_CAF1 192438 97 + 1 GGCAAUCAUGCUGCUAAUGCGCGUGUUAGCCGUAUUCC-UUGGCUAUUUGUUGGCAC--ACACUUAAUGCUAUCAGUUCCCUUAGGGUUAAUAAU---AGGUU (((...(((((.((....)))))))...)))....(((-(.((....(((.(((((.--........))))).)))...))..))))........---..... ( -23.60) >consensus GGCAAACAUGCUGCUAAUGCGCGUGUUAGCCAUACUCC_UCGGCCAUUUCUUGGCAC__ACACUUAUUGUUAUCAGUUCCCUUAGGGUUAAUAAUAUUAGGUU (((.(((((((.((....))))))))).)))...........((((.....))))......((((..((((((.....(((...)))...))))))..)))). (-13.38 = -16.82 + 3.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:17 2006