Locus 4051

Sequence ID 2L_DroMel_CAF1
Location 11,730,492 – 11,730,589
Length 97
Max. P 0.997944
window6381

overview

Window 1

Location 11,730,492 – 11,730,589
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 81.09
Mean single sequence MFE -32.37
Consensus MFE -22.97
Energy contribution -22.53
Covariance contribution -0.44
Combinations/Pair 1.18
Mean z-score -4.10
Structure conservation index 0.71
SVM decision value 2.97
SVM RNA-class probability 0.997944
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11730492 97 - 22407834
AACUCUUGUUGCACUUUUUACCCUUACGUUAACAGAUGAUUGUGAUGUGUAAGGAGGGGGGGGGGGGCUCGGUUGAAGUGGGGCAAGCGGGGUUUUG
..(.((((((.((((((...((((..(.(((.((.((.......)).))))).)..))))(((....)))....)))))).)))))).)........ ( -26.00)
>DroSec_CAF1 190420 81 - 1
AACUCUUGUUGCACUUUUUACCCUUACGUUAACAGAUGAUUGCGG--------GGGAAGGGGGUGG--------GAGGUGUGGCAAGAGGGGUUUUG
..(((((((..((((((((((((((.(((...(....)...))).--------.....))))))))--------))))))..)))))))........ ( -34.30)
>DroSim_CAF1 182655 81 - 1
AACUCUUGUUGCACUUUUUACCCUUACGUUAACAGAUGAUUGUAG--------GGGGAGGGGGUGG--------GAGGUGUGGCAAGAGGGGUUUUG
..(((((((..((((((((((((((.(.(..((((....))))..--------).)..))))))))--------))))))..)))))))........ ( -36.80)
>consensus
AACUCUUGUUGCACUUUUUACCCUUACGUUAACAGAUGAUUGUGG________GGGGAGGGGGUGG________GAGGUGUGGCAAGAGGGGUUUUG
..(((((((..((((((((((((((.((((....)))).((.(...........).))))))))))........))))))..)))))))........ (-22.97 = -22.53 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:03 2006