Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,729,070 – 11,729,160 |
Length | 90 |
Max. P | 0.591806 |
Location | 11,729,070 – 11,729,160 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 90.04 |
Mean single sequence MFE | -23.40 |
Consensus MFE | -17.52 |
Energy contribution | -17.65 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.04 |
Mean z-score | -1.63 |
Structure conservation index | 0.75 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11729070 90 - 22407834 GCAGUCGUUUCAUUUCCCUUGGC----CCUGUCUGAGGCUUCGGAUUUUCCAGAUGAAUAUUAAUUUGGGAAACGUCUAGUUUACACAAGCAAU ((((.((((((...(((...(((----((.....).))))..)))....((((((........)))))))))))).)).((....))..))... ( -24.20) >DroSec_CAF1 188487 90 - 1 GCAGUCGUUUCAUUUCCCUUGGC----CCUGUCUGAGGCUUCGGAUUUUCCAGAUGAAUAUUAAUUUGGGAAACGUCUAGUUUACACAAGCAGU ((((.((((((...(((...(((----((.....).))))..)))....((((((........)))))))))))).)).((....))..))... ( -24.20) >DroSim_CAF1 180724 90 - 1 GCAGUCGUUUCAUUUCCCUUGGC----CCUGUCUGAGGCUUCGGAUUUUCCAGAUGAAUAUUAAUUUGGGAAACGUCUAGUUUACACAAGCAGU ((((.((((((...(((...(((----((.....).))))..)))....((((((........)))))))))))).)).((....))..))... ( -24.20) >DroEre_CAF1 206344 94 - 1 GCAGUCGUUUCCUUCUCCUUGGCUUUUCCCCUCAGAGGCUUCUGAUUUUCCAGAUGCAUGCUAAUUUGGAAAACGCCUAGUUUACACAAGCCAU ...................((((((..........((((....(.((((((((((........))))))))))))))).........)))))). ( -21.01) >consensus GCAGUCGUUUCAUUUCCCUUGGC____CCUGUCUGAGGCUUCGGAUUUUCCAGAUGAAUAUUAAUUUGGGAAACGUCUAGUUUACACAAGCAAU ((((.((((((...................(((((......)))))...((((((........)))))))))))).)).((....))..))... (-17.52 = -17.65 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:08:00 2006