Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,723,706 – 11,723,813 |
Length | 107 |
Max. P | 0.805062 |
Location | 11,723,706 – 11,723,813 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 79.23 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -12.50 |
Energy contribution | -13.22 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.22 |
Mean z-score | -2.05 |
Structure conservation index | 0.55 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805062 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11723706 107 - 22407834 AUUUUAAAAAAAGAAAACAAACAACAGUUUGUCAUAUUUAAGACAGGCAA-----GUGGUUUGGAA----UCAGAGGAGACUACUACUAUUUAUAGUUGAAUCGUUGCUUAAGAAA .((((((..........(((((.((.(((((((........)))))))..-----)).)))))((.----(((.((....))...((((....))))))).)).....)))))).. ( -19.60) >DroSec_CAF1 183101 112 - 1 AUUUUAAAUAAAAAAAACAAGCAAUAGUUUGUCCAAUUUAAACUAGGCAAGCAAUGUGGUUUGAAA----UGAGAAGAGACUACGACUAUUUAUGGUUGAUGCAUUUGUUAAGAAA ...............((((((((.((((((.((((.(((((((((.(.......).))))))))).----)).))..))))))((((((....)))))).)))..)))))...... ( -21.80) >DroSim_CAF1 175324 112 - 1 AUUUUAAAUAAAACAAACAAACAAUAGUUUGUCAUAUUUAAAACAGGCAAGCAAUGUGGUUUGAAA----UGAGAAAAGACUACGACUAUUUAUAGUUGAUCCAUUUGCUAAGAAA .(((((((((..((((((........))))))..)))))))))..((((((....(((((((....----.......)))))))(((((....)))))......))))))...... ( -23.70) >DroEre_CAF1 200911 116 - 1 AUUUUAAAUAAAGCACACAAACAGUUGUUUGUCAUAUUUAAAACAGGCCAGCAACGUGGUCUCAGAAGUCUUAGAAGAGACUACGAUUAUUUAGUGGCGAUAAAUUCGUUAGGAGA .(((((((((..(((.((((....)))).)))..)))))))))....((.....(((((((((.............))))))))).........((((((.....))))))))... ( -28.82) >DroYak_CAF1 175026 112 - 1 AUUUAAAAUAGAGCGAACAAACAAUGGUUUGUCAUAUUUAAAAGAGGCAAGCAACGUGGUUUGAAA----UCAGAAGAGACUACGAUUAUUUAAAGGUAAUAAAUUUGUUAGGAAA .(((.(((((..((((((........))))))..))))).)))..((((((...((((((((....----.......))))))))((((((....))))))...))))))...... ( -19.00) >consensus AUUUUAAAUAAAGCAAACAAACAAUAGUUUGUCAUAUUUAAAACAGGCAAGCAACGUGGUUUGAAA____UCAGAAGAGACUACGACUAUUUAUAGUUGAUACAUUUGUUAAGAAA .(((((((((..((((((........))))))..)))))))))...........((((((((...............))))))))............................... (-12.50 = -13.22 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:55 2006