Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,713,409 – 11,713,520 |
Length | 111 |
Max. P | 0.912099 |
Location | 11,713,409 – 11,713,520 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.45 |
Mean single sequence MFE | -29.16 |
Consensus MFE | -14.04 |
Energy contribution | -16.48 |
Covariance contribution | 2.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.27 |
Structure conservation index | 0.48 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11713409 111 - 22407834 AUAU-GGCUAAAAUCGAAAGAGUAGGCCUGGGAAAUGCAGCAGCUGACUC--------AGUUGGCUAAGUGCCUGCCAGCGGAAGAAACCCAAAUAAAUAGCCAAAAACAAAGCCAAACA ...(-((((....((....))...(((.((((....((((((((((...)--------)))))((.....))))))...(....)...))))........)))........))))).... ( -29.40) >DroSec_CAF1 180261 111 - 1 GUAU-GGCUAAAAUCGAAAGAGUAGGCCUGUGAAAUGCAGCAGCUGACUC--------GGUUGGCUAAGUGCCUGCCAGCGGAGGAAAACGGAAUAAAUAGCCGAAAACAAAGCCAAACA ((.(-((((....((....))...(((((((........))))(((.(((--------.((((((.........)))))).))).....)))........)))........))))).)). ( -34.50) >DroSim_CAF1 172539 111 - 1 GUAU-GGCUAAAAUCGAAAGAGUAGGCCUGUGAAAUGCAGCAGCUGACUC--------AGUUGGCUAAGUGCCUGCCAGCGGAGGAAACCGGAAUAAAUAGCCGAAAACAAAGCCAAACA ((.(-((((....((....))...(((((((........))))(((.(((--------.((((((.........)))))).))).....)))........)))........))))).)). ( -32.70) >DroYak_CAF1 172082 119 - 1 AUAU-GGCUAACAUCGAAAAAGUAGGCCUGGGAAAUGCAGCAGCUGACUCAGUUACUCAGUUGGCUAAGUGCCUGCCAGCGAAGGAAAACGGAAUAAAUAGCCGAAAACAAAGCCAAACA ...(-((((..(.(((.....(((((((((.......))).(((..(((.((...)).)))..)))....))))))...))).).....(((.........))).......))))).... ( -30.30) >DroPer_CAF1 172378 88 - 1 GUAUUGGC-A-AGCC--AAAUGUAGACCUGAGAACUGCAGCAGCUGGCU-------------------GUGACCCCCAGCCA----AAGUGGAAUAAAUACC--AAAACAAAGAGAG--- ((.((((.-.-(((.--...(((((.........)))))...)))((((-------------------(.(....)))))).----..............))--)).))........--- ( -18.90) >consensus GUAU_GGCUAAAAUCGAAAGAGUAGGCCUGGGAAAUGCAGCAGCUGACUC________AGUUGGCUAAGUGCCUGCCAGCGGAGGAAAACGGAAUAAAUAGCCGAAAACAAAGCCAAACA .....(((((.........((((.((((((.......)))..))).)))).........((((((.........))))))..................)))))................. (-14.04 = -16.48 + 2.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:52 2006