Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,713,008 – 11,713,104 |
Length | 96 |
Max. P | 0.944517 |
Location | 11,713,008 – 11,713,104 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 85.19 |
Mean single sequence MFE | -15.67 |
Consensus MFE | -13.23 |
Energy contribution | -13.57 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.53 |
Structure conservation index | 0.84 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944517 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11713008 96 + 22407834 AGACAAACCCAAACCCAAACCCAAACCCAAACCCAAACCCAAACCUCAACUUCCACUGAAAUGGAACCCUCAUUGCCGUUUGGAGUUUGCCGUUGU ...........................(((...(((((((((((..(((.(((((......)))))......)))..)))))).)))))...))). ( -16.20) >DroSec_CAF1 179878 78 + 1 AGACAAACCCCAAC------------------CCAAACCCAACCCUCAACUUCCACUGAAAUGGAACCCUCAUUGCCGUUUGGAGUUUGCCGUUGU ..........((((------------------.(((((((((.(..(((.(((((......)))))......)))..).)))).)))))..)))). ( -13.30) >DroSim_CAF1 172157 78 + 1 AGACAAACCCCAAC------------------CCAAACCCAAACCUCAACUUCCACUGAAAUGGAACCCUCAUUGCCGUUUGGAGUUUGCCGUUGU ..........((((------------------.(((((((((((..(((.(((((......)))))......)))..)))))).)))))..)))). ( -17.50) >consensus AGACAAACCCCAAC__________________CCAAACCCAAACCUCAACUUCCACUGAAAUGGAACCCUCAUUGCCGUUUGGAGUUUGCCGUUGU .................................(((((((((((..(((.(((((......)))))......)))..)))))).)))))....... (-13.23 = -13.57 + 0.33)
Location | 11,713,008 – 11,713,104 |
---|---|
Length | 96 |
Sequences | 3 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 85.19 |
Mean single sequence MFE | -25.80 |
Consensus MFE | -20.47 |
Energy contribution | -20.47 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.91 |
Structure conservation index | 0.79 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683124 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11713008 96 - 22407834 ACAACGGCAAACUCCAAACGGCAAUGAGGGUUCCAUUUCAGUGGAAGUUGAGGUUUGGGUUUGGGUUUGGGUUUGGGUUUGGGUUUGGGUUUGUCU .....(((((((.((((((.((.....((.((((((....)))))).))...))(..(..(..((......))..)..)..)))))))))))))). ( -26.20) >DroSec_CAF1 179878 78 - 1 ACAACGGCAAACUCCAAACGGCAAUGAGGGUUCCAUUUCAGUGGAAGUUGAGGGUUGGGUUUGG------------------GUUGGGGUUUGUCU .....((((((((((((.((((.....((.((((((....)))))).))....)))).......------------------.)))))))))))). ( -26.60) >DroSim_CAF1 172157 78 - 1 ACAACGGCAAACUCCAAACGGCAAUGAGGGUUCCAUUUCAGUGGAAGUUGAGGUUUGGGUUUGG------------------GUUGGGGUUUGUCU .....((((((((((((.((((((...((.((((((....)))))).)).....)))...))).------------------.)))))))))))). ( -24.60) >consensus ACAACGGCAAACUCCAAACGGCAAUGAGGGUUCCAUUUCAGUGGAAGUUGAGGUUUGGGUUUGG__________________GUUGGGGUUUGUCU .....((((((((((((((..(((...((.((((((....)))))).)).....))).)))))).......................)))))))). (-20.47 = -20.47 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:51 2006