Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,707,823 – 11,707,927 |
Length | 104 |
Max. P | 0.844015 |
Location | 11,707,823 – 11,707,927 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.19 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -24.53 |
Energy contribution | -24.50 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.84 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.844015 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11707823 104 - 22407834 UCGAGCGAGCCGCUAGGCCUGUAAGGAAAUGUGGCUUGUUGUGCAAGUAGAUUAGCAUUGAAUUUGAAUGGAAAAUGAAAAUGUUUUCCACACACACACACAC----------------A ...((((((((((....((.....))....))))))))))((((((((.(((....)))..)))))..((((((((......)))))))))))..........----------------. ( -28.50) >DroPse_CAF1 161135 93 - 1 UCGAGCGAGCCUCUCGGCC----GGGAAAUGCGGCUUGUUCGGCAAGUAGAUUAGCAUUGGAUUUGAAUGGAAAAUGAAAAUGUUUUCCACACCC--AG--------------------- (((((((((((((((....----)))).....)))))))))))(((((.(((....)))..)))))..((((((((......)))))))).....--..--------------------- ( -27.60) >DroEre_CAF1 192177 105 - 1 UCGAGCGAGCCGCUAGGCCUGUAAGGAAAUGUGGCUUGUUGUGCAAGUGGAUUAGCAUUGAAUUUGAAUGGAAAAUGAAAAUGUUUUCCACACAC--ACACAC----------AC---UA ...((((((((((....((.....))....))))))))))(((...(((((..((((((..((((.......))))...)))))).)))))...)--))....----------..---.. ( -33.40) >DroYak_CAF1 166279 108 - 1 UCGAGCGAGCCGCUAGGCCUGUAAGGAAAUGUGGCUUGUUGUGCAAGUAGAUUAGCAUUGAAUUUGAAUGGAAAAUGAAAAUGUUUUCCACACAC--ACAUAC----------ACUCUUA ..(((((((((((....((.....))....)))))))).(((((((((.(((....)))..)))))..((((((((......))))))))....)--)))...----------.)))... ( -28.60) >DroAna_CAF1 172954 112 - 1 UUGAGCAGGCCGCU---CCUUGCAGGAAAUGCGGCUUGUUGUGCAAGUAGAUUAGCAUUGAAUUUGAAUGGAAAAUGAAAAUGUUUUCCACUCUC--ACACAGACACACACAGAC---CA ...(((((((((((---((.....)))...))))))))))((((((((......)).))).....((.((((((((......)))))))).))..--.)))..............---.. ( -30.70) >DroPer_CAF1 162235 93 - 1 CCGAGCGAGCCUCUCGGCC----GGGAAAUGCGGCUUGUUCUGCAAGUAGAUUAGCAUUGGAUUUGAAUGGAAAAUGAAAAUGUUUUCCACACCC--AG--------------------- (((((.......)))))..----(((.(((((.(((((.....)))))......))))).........((((((((......))))))))..)))--..--------------------- ( -27.30) >consensus UCGAGCGAGCCGCUAGGCCUGUAAGGAAAUGCGGCUUGUUGUGCAAGUAGAUUAGCAUUGAAUUUGAAUGGAAAAUGAAAAUGUUUUCCACACAC__ACACAC________________A ...((((((((((....((.....))....))))))))))...(((((.(((....)))..)))))..((((((((......)))))))).............................. (-24.53 = -24.50 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:49 2006