Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,704,638 – 11,704,745 |
Length | 107 |
Max. P | 0.602187 |
Location | 11,704,638 – 11,704,745 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 79.39 |
Mean single sequence MFE | -23.48 |
Consensus MFE | -14.52 |
Energy contribution | -14.16 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.32 |
Mean z-score | -1.71 |
Structure conservation index | 0.62 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11704638 107 + 22407834 UUACCAUGUAAAAAAAAAUGCGAUGGCCGUUUAACUUUAGUUGAGAAAGGAACAUA-AGCUUGAUUCGGCAAGCCGAAGCU-ACAUA---CCUUAACUGUAAAAUUAUAUUU ...(((((((........))).))))((.((((((....))))))...))......-((((....((((....))))))))-.....---...................... ( -17.80) >DroSec_CAF1 171395 106 + 1 UUACCAUGUAAA--AA--AGCGGUGGCCGAUCAACUUUAGUUGAAACAGGAACAUA-GGCUUGAUUCGGCAAGCCGAAACU-ACAUACUACCUUUACAGUAAAAUUAUAUUU ((((..((((((--..--...(((((((..(((((....)))))....))......-((((((......))))))......-.....))))))))))))))).......... ( -24.50) >DroSim_CAF1 163646 108 + 1 UUACCAUGUAAAAAAA--AGCGGUAACCGUUCAACUUUAGUUGAAAAAGGAACAUA-GGCUUGAUUCGGCAAGCCGAAACU-ACAUACUACCUUUACAGUAAAAUUAUAUUU ((((..((((((....--...((((.((.((((((....))))))...))......-((((((......))))))......-......)))))))))))))).......... ( -24.21) >DroEre_CAF1 188955 104 + 1 UUACCAUGUAAAAAA-----CGGUGGCUGUUCGACUUCAGUUGAAAAGAGAACAGACAGUUUUAUUCGGCAAGUCGAAGCUCACAUA---CCCUUGCAGUAGAAAUGCAUUA ......(((((....-----..((((((..(((((((..((((((...(((((.....))))).)))))))))))))))).)))...---...)))))(((....))).... ( -27.90) >DroYak_CAF1 162940 103 + 1 UUACUAUGUAAAAAA-----CGGUGGCCGUUCAACUUCAGUUGAAACAAGAGCGGA-AGUCAUAUUCGGCAAGUCGAAGCUUACAUA---CCUUUGCAGUAGAUAUAAAUUU ...(((((((((...-----.((((((((((((((....))))))....((.(...-.))).....))))((((....))))...))---)))))))).))).......... ( -23.00) >consensus UUACCAUGUAAAAAAA___GCGGUGGCCGUUCAACUUUAGUUGAAAAAGGAACAUA_AGCUUGAUUCGGCAAGCCGAAGCU_ACAUA___CCUUUACAGUAAAAUUAUAUUU ((((..((((((..........((..((.((((((....))))))...)).))...........(((((....)))))..............)))))))))).......... (-14.52 = -14.16 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:48 2006