Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,704,465 – 11,704,555 |
Length | 90 |
Max. P | 0.959222 |
Location | 11,704,465 – 11,704,555 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.19 |
Mean single sequence MFE | -31.25 |
Consensus MFE | -21.85 |
Energy contribution | -21.47 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.08 |
Mean z-score | -2.79 |
Structure conservation index | 0.70 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886749 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11704465 90 + 22407834 ------------GUGCUGGUGUG----UGUGGGCGCCACAAAAAUGAAAACAAAUUUUGGCAUGAUUGCUGAUUGUUUGUCUUUUUCAUUGUUUGGCACGAAUGCU-------------- ------------((((((((((.----.....))))))(((((((((((((((((.(..(((....)))..)..))))))...))))))).)))))))).......-------------- ( -29.00) >DroPse_CAF1 158665 102 + 1 ------------G--UGUGUGU----GUGUGGGCGCCACAAAAAUGAAAACAAAUUUUGGCAUGAUUGCUGAUUGUUUGUCUUUUUCAUUGUUUGGCACGACUGCCGCUAUGGCUAUGUC ------------(--((((((.----(((....))))))...(((((((((((((.(..(((....)))..)..))))))...))))))).....))))(((.(((.....)))...))) ( -30.20) >DroSim_CAF1 163469 94 + 1 ------------GUGCUGGUGUGUGUGUGUGGGCGCCACAAAAAUGAAAACAAAUUUUGGCAUGAUUGCUGAUUGUUUGUCUUUUUCAUUGUUUGGCACGAAUGCU-------------- ------------((((..(((((.((((....))))))))..(((((((((((((.(..(((....)))..)..))))))...)))))))..)..)))).......-------------- ( -30.00) >DroYak_CAF1 162749 102 + 1 GUGCUGGUGUUAGUGCUGGUGU----GUGUGGGCGCCACAAAAAUGAAAACAAAUUUUGGCAUGAUUGCUGAUUGUUUGUCUUUUUCAUUGUUUGGCACGAAUGCU-------------- ((((((((((..(..(......----)..)..))))))(((((((((((((((((.(..(((....)))..)..))))))...))))))).)))))))).......-------------- ( -33.50) >DroAna_CAF1 170051 96 + 1 ------------GUGGGUGUGU----GUAUGGGUGCCACAAAAAUGAAAACAAAUUUUGGCAUGAUUGCUGAUUGUUUGUCUUUUUCAUUGUUUGGCACGAAUGCCACU--------GCC ------------...((((((.----((((..((((((....(((((((((((((.(..(((....)))..)..))))))...)))))))...))))))..))))))).--------))) ( -34.60) >DroPer_CAF1 159730 104 + 1 ------------CUGUGUGUGU----GUGUGGGCGCCACAAAAAUGAAAACAAAUUUUGGCAUGAUUGCUGAUUGUUUGUCUUUUUCAUUGUUUGGCACGACUGCCGCUAUGGCUAUGUC ------------..(((((((.----(((....))))))...(((((((((((((.(..(((....)))..)..))))))...))))))).....))))(((.(((.....)))...))) ( -30.20) >consensus ____________GUGCGGGUGU____GUGUGGGCGCCACAAAAAUGAAAACAAAUUUUGGCAUGAUUGCUGAUUGUUUGUCUUUUUCAUUGUUUGGCACGAAUGCC______________ ...............................(((((((....(((((((((((((.(..(((....)))..)..))))))...)))))))...))))......))).............. (-21.85 = -21.47 + -0.39)
Location | 11,704,465 – 11,704,555 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.19 |
Mean single sequence MFE | -20.70 |
Consensus MFE | -18.00 |
Energy contribution | -17.87 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.05 |
Mean z-score | -2.60 |
Structure conservation index | 0.87 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11704465 90 - 22407834 --------------AGCAUUCGUGCCAAACAAUGAAAAAGACAAACAAUCAGCAAUCAUGCCAAAAUUUGUUUUCAUUUUUGUGGCGCCCACA----CACACCAGCAC------------ --------------.......((((((...((((((...((((((......(((....))).....))))))))))))....)))))).....----...........------------ ( -17.80) >DroPse_CAF1 158665 102 - 1 GACAUAGCCAUAGCGGCAGUCGUGCCAAACAAUGAAAAAGACAAACAAUCAGCAAUCAUGCCAAAAUUUGUUUUCAUUUUUGUGGCGCCCACAC----ACACACA--C------------ (((...(((.....))).)))((((((...((((((...((((((......(((....))).....))))))))))))....))))))......----.......--.------------ ( -24.00) >DroSim_CAF1 163469 94 - 1 --------------AGCAUUCGUGCCAAACAAUGAAAAAGACAAACAAUCAGCAAUCAUGCCAAAAUUUGUUUUCAUUUUUGUGGCGCCCACACACACACACCAGCAC------------ --------------.......((((((...((((((...((((((......(((....))).....))))))))))))....))))))....................------------ ( -17.80) >DroYak_CAF1 162749 102 - 1 --------------AGCAUUCGUGCCAAACAAUGAAAAAGACAAACAAUCAGCAAUCAUGCCAAAAUUUGUUUUCAUUUUUGUGGCGCCCACAC----ACACCAGCACUAACACCAGCAC --------------.......((((((...((((((...((((((......(((....))).....))))))))))))....))))))......----......((..........)).. ( -18.10) >DroAna_CAF1 170051 96 - 1 GGC--------AGUGGCAUUCGUGCCAAACAAUGAAAAAGACAAACAAUCAGCAAUCAUGCCAAAAUUUGUUUUCAUUUUUGUGGCACCCAUAC----ACACACCCAC------------ ((.--------.(((......((((((...((((((...((((((......(((....))).....))))))))))))....))))))......----.)))..))..------------ ( -22.52) >DroPer_CAF1 159730 104 - 1 GACAUAGCCAUAGCGGCAGUCGUGCCAAACAAUGAAAAAGACAAACAAUCAGCAAUCAUGCCAAAAUUUGUUUUCAUUUUUGUGGCGCCCACAC----ACACACACAG------------ (((...(((.....))).)))((((((...((((((...((((((......(((....))).....))))))))))))....))))))......----..........------------ ( -24.00) >consensus ______________AGCAUUCGUGCCAAACAAUGAAAAAGACAAACAAUCAGCAAUCAUGCCAAAAUUUGUUUUCAUUUUUGUGGCGCCCACAC____ACACAAGCAC____________ .....................((((((...((((((...((((((......(((....))).....))))))))))))....))))))................................ (-18.00 = -17.87 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:47 2006