Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,230,064 – 1,230,179 |
Length | 115 |
Max. P | 0.964840 |
Location | 1,230,064 – 1,230,179 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.58 |
Mean single sequence MFE | -35.72 |
Consensus MFE | -29.96 |
Energy contribution | -30.92 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.03 |
Mean z-score | -1.89 |
Structure conservation index | 0.84 |
SVM decision value | 1.57 |
SVM RNA-class probability | 0.964840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1230064 115 + 22407834 GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCGCCGUGCCAUCAAACACCGAAA--AAGUGUC---GGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU ((((.(((((.(((((.......(((((((((((((........)).((((..--.....))---)).))))))))))).(((...((.......)).))).))))).))))).)))).. ( -38.70) >DroSec_CAF1 7419 115 + 1 GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCGCCGUGCCAUCAAACACCGAGG--AAGUGUC---GGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU ((((.(((((.(((((.......(((((((((((((........)).((((..--.....))---)).))))))))))).(((...((.......)).))).))))).))))).)))).. ( -38.60) >DroSim_CAF1 3214 116 + 1 GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCGCCGUGCCAUCAAACACCGAGG--AAGUGUC--UGGGGGCGGACAUCUAUGCAAAGCUAAACGUGCUGCAACUAACAACUAAAUUUCAU ((((.(((((.(((((.......(((((((((((((........)).((.(((--.....))--).))))))))))))).((((..((.....))..)))).))))).))))).)))).. ( -40.80) >DroEre_CAF1 3376 117 + 1 GAAAAUUGGCCGCUGGGUUUUUCGGGCGCUCGUCGUGCAUUUACACACAAAAAAAAAGUGUU---GGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU ((((.((((.((((.((....)).))))...((.(((......)))))..........((((---((..((((....)).((((..........))))))..)))))).)))).)))).. ( -25.40) >DroYak_CAF1 3246 119 + 1 GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCCUCGUGCCAUCAAACACCAAAA-AAAGUGUUGUGGGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU ((((.(((((.(((((.......((((((.((.(.(.((((..(((((.....-...))))))))).).).)))))))).(((...((.......)).))).))))).))))).)))).. ( -35.10) >consensus GAAAAUUGGUCGUUGGGUUUUUCGGGUGUUCGCCGUGCCAUCAAACACCGAAA__AAGUGUC___GGGGGCGGACAUCUAUGCAAAGCUAAACGUGCAGCAACUAACAACUAAAUUUCAU ((((.(((((.(((((.......(((((((((((...((.....((((.........)))).....))))))))))))).(((...((.......)).))).))))).))))).)))).. (-29.96 = -30.92 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:08 2006