| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,702,764 – 11,702,860 |
| Length | 96 |
| Max. P | 0.767710 |
| Location | 11,702,764 – 11,702,860 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 78.52 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -14.23 |
| Energy contribution | -14.73 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767710 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11702764 96 + 22407834 AUGACAGGGUGUGACA--AAACAAAGAGCCGA-ACGACU-GCGAAGGAAGCCAUUAUCCUUGCGUUAUUUAUGACAAUUUCCUUAUGAGUAUUGC------------CACCC ......(((((.(.((--(.............-......-((.(((((........)))))))..(((((((((........)))))))))))))------------))))) ( -19.90) >DroPse_CAF1 156343 106 + 1 AUUCCAGGGUACAUCA--AAACAAAGAGCGGA-AGCAUUUCCAAGGGAAACCAUUAUCCGUGGGUUAUUUAUGACAAUUUCCUUAUGAGUUCUCCAAA---ACCCACCGCCC ......(((((.....--.........((...-.))........((....))..)))))(((((((((((((((........)))))))).......)---))))))..... ( -26.71) >DroEre_CAF1 187076 107 + 1 AUGACAGGGUGUGGCA--AAACAAAGAGCAGA-AGCACU-GCAAAGGAAGCCAUUAUCCUUGCGUUAUUUAUGACAAUUUCCUUAUGAGUAUUGCCGCCCCACAUC-CACCC ......(((.((((((--(.((.....((((.-....))-)).((((((((..........))((((....))))...))))))....)).)))))))))).....-..... ( -31.20) >DroYak_CAF1 161107 107 + 1 AUGACAGGGUGUGGCA--AAACAAAGAGCAGA-ACCACU-GCAAAGGAAGCCAUUAUCCUUGCGUUAUUUAUGACAAUUUCCUUAUGAGUAUUGCCGCCCCACAUC-CACCC ......(((.((((((--(.((.....((((.-....))-)).((((((((..........))((((....))))...))))))....)).)))))))))).....-..... ( -31.20) >DroAna_CAF1 168347 109 + 1 AUUACUGGGUGCGACCAAAAACAAAAGCAAGAAGCCACU-CCAAAGGAAACCAUUAUCCUGGCGUUAUUUAUGACAAUUUCCUUAUGAGUAUUGCCAUCCC-CAUC-CACCU ......(((((.((.........................-....((((........))))((((.(((((((((........))))))))).)))).....-..))-))))) ( -21.70) >DroPer_CAF1 155674 109 + 1 AUUCCAGGGUACAUCA--AAACAAAGAGCGGA-AGCAUUUCCAAGGGAAACCAUUAUCCGUGGGUUAUUUAUGACAAUUUCCUUAUGAGUUCUCCAAACCCACCCCCCCCUC ......(((((.....--.........((...-.))........((....))..)))))(((((((((((((((........))))))))......)))))))......... ( -26.90) >consensus AUGACAGGGUGCGACA__AAACAAAGAGCAGA_ACCACU_CCAAAGGAAACCAUUAUCCUUGCGUUAUUUAUGACAAUUUCCUUAUGAGUAUUGCCAACCCACAUC_CACCC ......(((((................................(((((........)))))(((.(((((((((........))))))))).)))............))))) (-14.23 = -14.73 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:44 2006