Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,696,550 – 11,696,643 |
Length | 93 |
Max. P | 0.994239 |
Location | 11,696,550 – 11,696,643 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 77.83 |
Mean single sequence MFE | -26.15 |
Consensus MFE | -11.92 |
Energy contribution | -13.57 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.33 |
Mean z-score | -3.64 |
Structure conservation index | 0.46 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11696550 93 + 22407834 UCCGCAUU-----UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGGCCGAGGUAAAAACUUUGUCAUCUCU .....(((-----(((((((((.....)))).)))))))).......((((..(((((.....)))))..))))((((((....))))))........ ( -30.80) >DroPse_CAF1 148505 88 + 1 CCCCCCUUGCCGCCCCUUGCCCCACCGCCUUUGCGGCAAUUUCAUUAUCCUAACGAGUUGUUUACUCGAC----------AAAAACUUUGUCAUCUCC ......(((((((.....((......))....)))))))...............((((.....))))(((----------((.....)))))...... ( -19.90) >DroSim_CAF1 155627 93 + 1 UCCGCAUU-----UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGGCCGAGGUAAAAACUUUGUCAUCUCU .....(((-----(((((((((.....)))).)))))))).......((((..(((((.....)))))..))))((((((....))))))........ ( -30.80) >DroEre_CAF1 181105 93 + 1 UCCGCAUU-----UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGGUCGAAGUAAAAACUUUGUCAUCUCU .....(((-----(((((((((.....)))).)))))))).......((((..(((((.....)))))..))))((((((....))))))........ ( -28.90) >DroYak_CAF1 154775 93 + 1 UCCGCAUU-----UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGGUCGAGGUAAAAACUUUGUCAUCUCU .....(((-----(((((((((.....)))).)))))))).......((((..(((((.....)))))..))))((((((....))))))........ ( -28.60) >DroPer_CAF1 149195 85 + 1 ---CCCUUGCCACCCUUUGCCCCGCCGCCUUUGCGGCAAUUUCAUUAUCCUAACGAGUUGUUUACUCGAC----------AAAAACUUUGUCAUCUCC ---....................(((((....))))).................((((.....))))(((----------((.....)))))...... ( -17.90) >consensus UCCGCAUU_____UCUUGGCCACAUCAUGGCACAAGAAAUUUCAUUAGCCUAACGAGUUGUUUGCUCGGCAGG_CGAGGUAAAAACUUUGUCAUCUCU .............(((((((((.....)))).)))))..........((((..(((((.....)))))..))))........................ (-11.92 = -13.57 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:39 2006