Locus 4034

Sequence ID 2L_DroMel_CAF1
Location 11,694,009 – 11,694,108
Length 99
Max. P 0.564599
window6356

overview

Window 6

Location 11,694,009 – 11,694,108
Length 99
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 92.34
Mean single sequence MFE -33.10
Consensus MFE -27.51
Energy contribution -27.67
Covariance contribution 0.16
Combinations/Pair 1.05
Mean z-score -1.31
Structure conservation index 0.83
SVM decision value 0.06
SVM RNA-class probability 0.564599
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11694009 99 - 22407834
UGGGUGGUCCUGCGGCCAGGAAAUGAAGUAGAAGUCGCCGACAUUAACGCACAAAGGCGACGUUGCAAGUUGCAACUU-------GCCAGUGGAUUCCGGGACAAC
......((((((..((((((.............((((((................))))))(((((.....)))))..-------.))..))).)..))))))... ( -30.89)
>DroSec_CAF1 155459 99 - 1
UGGGUGGUCCUGCGGCCAGGAAAUGAAGUUGAAGUCGCCGACAUUAACGCAAAAAGGCGACGUUGCAAGUUGCAACUU-------GCCAGUGGAUUCCGGGGCAAC
......((((((..((((.........(((((.(((...))).))))).......(((((.(((((.....)))))))-------)))..))).)..))))))... ( -31.90)
>DroSim_CAF1 153039 99 - 1
UGGGUGGUCCUGCGGCCAGGAAAUGAAGUUGAAGUCGCCGACAUUAACGCAAAAAGGCGACGUUGCAAGUUGCAACUU-------GCCAGUGGAUUCCGGGGCAAC
......((((((..((((.........(((((.(((...))).))))).......(((((.(((((.....)))))))-------)))..))).)..))))))... ( -31.90)
>DroEre_CAF1 178507 106 - 1
UUGCUGGUCCUGCGGCCAGGAAAUGAAGUUGAAGUCGCCGACAUUAACGCAAAAAGGCGACGUUGCAAGUUGCAAGUUGCAAGUUGGCAGUGGAUUGCGGUACAAC
.(((((((((.((.(((((........(((((.(((...))).)))))((((....(((((.......)))))...))))...))))).))))))..))))).... ( -32.90)
>DroYak_CAF1 152102 99 - 1
UUGGUGGUCCUGCGGCCAGGAAAUGAAGUUGAAGUCGCCGACAUUAACGUAAAAAGGCGACGUUGCAAGUUGCAACUU-------GCCAGUGGAUUGCGGGACAGC
......((((((((((((.........(((((.(((...))).))))).......(((((.(((((.....)))))))-------)))..))).)))))))))... ( -37.90)
>consensus
UGGGUGGUCCUGCGGCCAGGAAAUGAAGUUGAAGUCGCCGACAUUAACGCAAAAAGGCGACGUUGCAAGUUGCAACUU_______GCCAGUGGAUUCCGGGACAAC
......((((((...(((...............((((((................))))))(((((.....)))))..............)))....))))))... (-27.51 = -27.67 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:38 2006