Locus 4032

Sequence ID 2L_DroMel_CAF1
Location 11,692,088 – 11,692,182
Length 94
Max. P 0.590361
window6353

overview

Window 3

Location 11,692,088 – 11,692,182
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 91.91
Mean single sequence MFE -31.26
Consensus MFE -24.32
Energy contribution -24.80
Covariance contribution 0.48
Combinations/Pair 1.10
Mean z-score -1.54
Structure conservation index 0.78
SVM decision value 0.11
SVM RNA-class probability 0.590361
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11692088 94 + 22407834
AUUCUCCUUAUCCAUUCCCUGGGUGGUUUUCUUAUAGGGCGGCACAGGGGGAUGUCAGAUCCACAGCCUUGAAUGGAUGGGUUGAAUGGUCCUG
((((..(((((((((((((((.((.(((((.....))))).)).)))).((((.....))))........)))))))))))..))))....... ( -31.90)
>DroSec_CAF1 153595 94 + 1
AUUCUCCUUAUCCAUUCCCUGGGUGGUUUUCUUAUAGGGCAGCACAGGGGGAUGUCAGAUCCACAGCCUUGAAUGGAUGGGUUGAAUGGUCCUG
((((..((((((((((((((((.((.(((......))).)).).)))).((((.....))))........)))))))))))..))))....... ( -30.40)
>DroSim_CAF1 151174 94 + 1
AUUCUCCUUAUCCAUUCCCUGGGUGGUUUUCUUAUAGGGCGGCACAGGGGGAUGUCAGAUCCACAGCCUUGAAUGGAUGGGUUGAAUGGUCCUG
((((..(((((((((((((((.((.(((((.....))))).)).)))).((((.....))))........)))))))))))..))))....... ( -31.90)
>DroEre_CAF1 176531 93 + 1
AUUCUCCUUAGCCAUUCCCUGGGUAGUUUUCUUAUAGGGAAGA-AAGGGGGUUGUCAGAUCCACAGCCCUGAAUGGAUGGGUUGAAUGGUCCUG
..(((((((.....(((((((...((....))..)))))))..-)))))))....(((..(((((((((.........))))))..)))..))) ( -30.40)
>DroYak_CAF1 150198 94 + 1
AUUCUACUUUUCCAUUCCCAGGAUGGCUUUCUUAUAGGGAAGCACAGGGGGAGGUCAGAUCCACAGGCUCGAAUGGAGGGGUUGAAUGGUCCUG
((((.((((((((((((((....(((((((((....))))))).)).))(((.......)))........)))))))))))).))))....... ( -31.70)
>consensus
AUUCUCCUUAUCCAUUCCCUGGGUGGUUUUCUUAUAGGGCAGCACAGGGGGAUGUCAGAUCCACAGCCUUGAAUGGAUGGGUUGAAUGGUCCUG
((((..(((((((((((((((....(((.(((....))).))).)))).((((.....))))........)))))))))))..))))....... (-24.32 = -24.80 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:35 2006