Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 11,686,183 – 11,686,273 |
Length | 90 |
Max. P | 0.904213 |
Location | 11,686,183 – 11,686,273 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 99.26 |
Mean single sequence MFE | -22.39 |
Consensus MFE | -22.06 |
Energy contribution | -22.39 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.99 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.904213 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11686183 90 - 22407834 GGCCACAUGUGCGGGCUGACAGCUACGCAAAUAGGAGCGAACCGCGUAGAACAAAAACCGAAAACAGAAAAAAUUGUGAAAAUAGUGGUG .(((((.(((.(((........((((((.....((......))))))))........)))...)))........(((....)))))))). ( -23.19) >DroSec_CAF1 147443 90 - 1 GGCCACAUGUGCGGGCUGACAGCUACGCAAAUAGGAGCGAACCGCGUAGAACAAAAACCGAAACCAGAAAAAAUUGUGAAAAUAGUGGUG .(((((.....(((........((((((.....((......))))))))........)))..............(((....)))))))). ( -20.79) >DroSim_CAF1 145271 90 - 1 GGCCACAUGUGCGGGCUGACAGCUACGCAAAUAGGAGCGAACCGCGUAGAACAAAAACCGAAAACAGAAAAAAUUGUGAAAAUAGUGGUG .(((((.(((.(((........((((((.....((......))))))))........)))...)))........(((....)))))))). ( -23.19) >consensus GGCCACAUGUGCGGGCUGACAGCUACGCAAAUAGGAGCGAACCGCGUAGAACAAAAACCGAAAACAGAAAAAAUUGUGAAAAUAGUGGUG .(((((.(((.(((........((((((.....((......))))))))........)))...)))........(((....)))))))). (-22.06 = -22.39 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:07:31 2006